PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05186g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 98aa    MW: 11682.3 Da    PI: 7.503
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05186g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.32.5e-091689272
                       NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka..eekewyfFskrdkkyatgk 72
                              p+G  FhPtd e++ +yL   v++++l++++  ++++d+y   eP+++ ++++   ++k  yf +++ k+++t k
  Niben101Scf05186g00001.1 16 PMGNFFHPTDREVL-KYLLGFVRDEPLQCQNElMQQTDLYADkEPRQIFETYDDhgTNKTRYFITPQTKEKPTWK 89
                              78999*******99.9**********99977669999*997559****744433213446699999999988755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-81093IPR003441NAC domain
PROSITE profilePS510059.5681598IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MTYSDHRAMG CSSRYPMGNF FHPTDREVLK YLLGFVRDEP LQCQNELMQQ TDLYADKEPR  60
QIFETYDDHG TNKTRYFITP QTKEKPTWKS LVRIIVTL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598748.16e-51PREDICTED: NAC domain-containing protein 53-like
TrEMBLA0A314KVH58e-53A0A314KVH5_NICAT; Uncharacterized protein
STRINGXP_009598748.12e-50(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385