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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Niben101Scf05123g02008.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
ERF |
Protein Properties |
Length: 387aa MW: 42940.4 Da PI: 4.5999 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf05123g02008.1 | genome | BTI | - |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g
Niben101Scf05123g02008.1 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 165
69*******.**********954...4************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MCGGAIISDY TAPSRTSRRL TAELLWGRSD LSNKQNFFNN YHSKRLRSQV VDLDDDFEAD 60 FQDFKDFSND EDVQVDVKRF ALSASKNSTV EGSKSMKTVD SDKDADRFSK RKRKNQYRGI 120 RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDVEA RRIRGNKAKV NFPDEAPVPA 180 SRRIVKVNPQ KVLPKESADS VQPGSTVMNN MEDGCYDSLG FLEEKPMTKQ FGYEDGSNAS 240 GDTGFSSFAP SAGTDIYFNS DVGSNSFDCS DFGWGEPCAR TPEISSVLSA AIESNESQLV 300 EDSASPMKKL KSSPIDPVPD DGNTTNKLSE ELSAFETQMK FLQIPYLEGN WDASVDPFLN 360 PSATQGGENA MDLWSFDDVP SLLGGVF
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gcc_A | 4e-21 | 116 | 173 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-20 | 115 | 175 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
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