PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05087g03005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 297aa MW: 31786.2 Da PI: 8.6862

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05087g03005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.6e-39	56	114	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++++cprCds ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ Niben101Scf05087g03005.1 56 SESIRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNT 114 57899***************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.3E-32	58	113	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-24	59	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	59	113	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	61	97	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MIQELFAGNT TLIGGGENIS KQFSTPSSSP LSSTSNSSTL TTNIPAAANA SSSSNSESIR 60 CPRCDSPNTK FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGCRK NKNTNVTTTS 120 AAKSTAAKLK ASLPSFLGGI EHEISNSNPF LFSSPQNQYP LISILRGNHQ NLCFNADTCH 180 FPNSVADKEE GKSIGVNSYN QLPNSLGFCN NLWNNNQQNG SIIGEVQSSG LQDLYQRLKA 240 STSRCYPAHA PSPLGNAASS SSVILESAPV GAGAELGFWN PSISTWSDLQ TANGAYF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016439189.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	A0A1S3XH70	0.0	A0A1S3XH70_TOBAC; dof zinc finger protein DOF5.7-like
STRING	XP_009775010.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-32	DOF zinc finger protein 1