PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05078g08009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 440aa    MW: 49022.1 Da    PI: 7.4695
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05078g08009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-174996148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd  l d+++++G g+W+++ ++ g+ R++k+c++rw ++l
  Niben101Scf05078g08009.1 49 KGPWTKEEDAVLMDYIRKHGEGNWSAVQKHSGLARCGKSCRLRWANHL 96
                              79******************************************9986 PP
2Myb_DNA-binding44.43.9e-14102145146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +g+ T+eE  ++ ++++++G++ W++Ia++++ gRt++++k++w++
  Niben101Scf05078g08009.1 102 KGALTPEEVRRINELHAKMGNK-WARIAAKLP-GRTDNEIKNYWNT 145
                               6788******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3754496IPR017930Myb domain
SuperFamilySSF466891.72E-2946143IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-244799IPR009057Homeodomain-like
SMARTSM007177.9E-144898IPR001005SANT/Myb domain
PfamPF002492.2E-154996IPR001005SANT/Myb domain
CDDcd001677.93E-125196No hitNo description
PROSITE profilePS5129425.2997151IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-23100150IPR009057Homeodomain-like
SMARTSM007174.1E-13101149IPR001005SANT/Myb domain
PfamPF002497.7E-13102145IPR001005SANT/Myb domain
CDDcd001672.72E-10106145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MELAINVASN MCMTSECIDR MTSKVGMGSP SAEEASSGGN IRGGVPLKKG PWTKEEDAVL  60
MDYIRKHGEG NWSAVQKHSG LARCGKSCRL RWANHLRPDL KKGALTPEEV RRINELHAKM  120
GNKWARIAAK LPGRTDNEIK NYWNTRIKKR QRVGLQMYPP DICFQAFSEN KQNKELGLFC  180
SANSHPDFLP INGFEIPTAE HKKLEPSQQL YPRALVNIAS TFFDIPATSL LAQALSSSNT  240
CSGLSTMHPS KHTQGSESWF FGITDDLFQV CHQYHNDGSL FAQSLGVSSS YTHNLISDHH  300
PSFSGEIPGS HSPLNGNSSS LEPKWAKKLE LPSFQIQMAN WGSPSPLPSL ESFDTVIQYP  360
PNEHADSGSL SPRNSGLLDA VLYESQTSKA SKHNSHQETS CDVVDDSCPD IQERQWELTQ  420
GLHQTRVRNH MRMPEHINLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31441501107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244850.10.0PREDICTED: transcription factor GAMYB-like isoform X1
TrEMBLA0A1U7W9710.0A0A1U7W971_NICSY; transcription factor GAMYB-like isoform X1
STRINGXP_009771204.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-71myb domain protein 33