PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 308aa MW: 35465.8 Da PI: 6.2438

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05060g08015.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.3	6e-57	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL++kv + ++++ ++i evd++kvePwdLp k+k +ekewyfF+ rdkky+tg+r+nrat++gyWka Niben101Scf05060g08015.1 16 LPPGFRFHPTDEELITHYLAPKVLDCNFSA-KAIGEVDLNKVEPWDLPWKAKMGEKEWYFFCIRDKKYPTGQRTNRATEAGYWKA 99 79************************99.88***********888999*************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkdke+++ +++lvg+kktLvfykgrap+gekt+Wvmheyrl Niben101Scf05060g08015.1 100 TGKDKEIFR-SKTLVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 141 *****.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-61	12	151	IPR003441	NAC domain
PROSITE profile	PS51005	54.957	16	164	IPR003441	NAC domain
Pfam	PF02365	1.0E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
METACGFEGY EEEMELPPGF RFHPTDEELI THYLAPKVLD CNFSAKAIGE VDLNKVEPWD 60 LPWKAKMGEK EWYFFCIRDK KYPTGQRTNR ATEAGYWKAT GKDKEIFRSK TLVGMKKTLV 120 FYKGRAPRGE KTNWVMHEYR LDGKYSVHNL PKSAQIAITS LIRNNNMTES PRSSNLPPLM 180 DMSPYNNQIT TTTRSSGETS NSHVTCFSDS MEDQKPQTHQ PLACSPPSVD FPKYPSNTPK 240 QVMQPYIENF QYVDSGLMQD NSILRLLLEN NSYESESKHN NHLRGYEDHN DFNINSAGPV 300 DLDCLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-51	13	141	14	142	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-51	13	141	14	142	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-51	13	141	14	142	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-51	13	141	14	142	NO APICAL MERISTEM PROTEIN
4dul_A	4e-51	13	141	14	142	NAC domain-containing protein 19
4dul_B	4e-51	13	141	14	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009768516.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-106	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U7VUA0	0.0	A0A1U7VUA0_NICSY; NAC domain-containing protein 100-like
STRING	XP_009768516.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-108	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]