PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05060g05007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 464aa MW: 50965.1 Da PI: 6.688

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05060g05007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	9.7e-39	113	171	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+l+cprC+s++tkfCy+nny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+ Niben101Scf05060g05007.1 113 PDKILPCPRCNSMETKFCYFNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKN 171 7899****************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	110	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-32	115	171	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	117	171	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	119	155	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MAEAIANKDP AIKLFGRTIQ LPDFPALSPA DTGDYSSSSR VAELEHKGQC DDCKDENEHL 60 IAKELQDRNP IPEKSDIIEE SPSYNDCSIA KTSKSEEEQA ETSNSQEKIL KKPDKILPCP 120 RCNSMETKFC YFNNYNVSQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKHK NPVLHYHHIS 180 VSETLTDLSN GIQPPPLKLN GTILPFDTDK PLRESMGSVL NIADKTMQDC SGNGFHRYKE 240 LGIQAGDNGD DRSDGSSVTA LSSKDSDNGS PDMPRQNCDS FSPHLPCFTG APWPYPWSSV 300 HLSNAVPPPG YYLPSFPMPF VPAYWGCAIP GSCNVPWMSP PTASQNQMPP TSSPNSPTLG 360 KHPRDEIILK SMGSEEEPRK ESNPPEKCLW FPKTLRIGEP GEAAKSSIWA TLGIKHDGVN 420 SVSGGSFKAF LPKSDERNHV SGNSSVLKAN PAAMSRSLNF KENS

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MAEAIANKDP AIKLFGRTIQ LPDFPALSPA DTGDYSSSSR VAELEHKGQC DDCKDENEHL  60
IAKELQDRNP IPEKSDIIEE SPSYNDCSIA KTSKSEEEQA ETSNSQEKIL KKPDKILPCP  120
RCNSMETKFC YFNNYNVSQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKHK NPVLHYHHIS  180
VSETLTDLSN GIQPPPLKLN GTILPFDTDK PLRESMGSVL NIADKTMQDC SGNGFHRYKE  240
LGIQAGDNGD DRSDGSSVTA LSSKDSDNGS PDMPRQNCDS FSPHLPCFTG APWPYPWSSV  300
HLSNAVPPPG YYLPSFPMPF VPAYWGCAIP GSCNVPWMSP PTASQNQMPP TSSPNSPTLG  360
KHPRDEIILK SMGSEEEPRK ESNPPEKCLW FPKTLRIGEP GEAAKSSIWA TLGIKHDGVN  420
SVSGGSFKAF LPKSDERNHV SGNSSVLKAN PAAMSRSLNF KENS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019224786.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A1J6INK0	0.0	A0A1J6INK0_NICAT; Cyclic dof factor 2
STRING	XP_009792864.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-90	cycling DOF factor 2