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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05057g04016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 216aa MW: 24820.2 Da PI: 6.9527 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.4 | 1.3e-27 | 134 | 192 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+W KYG+K+vk++++pr+YY+C+s gC+vkkkver+ d +++++tYeg+Hnhe Niben101Scf05057g04016.1 134 LDDGYKWTKYGKKKVKSNTNPRNYYKCSSGGCKVKKKVERDGIDFNYLITTYEGKHNHE 192 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-28 | 120 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-24 | 127 | 194 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.851 | 129 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-27 | 134 | 193 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-21 | 135 | 192 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MFGSSTFQET INFSHQTINP NFAFSPLINM NQDHGHNMYQ DFDTSFIDQL INDGEKYSNS 60 NNSFNSTSLY SQNPFMQQEI STSTYSGNSS ASSFDATPTN IHMNENSSNK GIEKEKKTEK 120 HAIAFRTKTE LETLDDGYKW TKYGKKKVKS NTNPRNYYKC SSGGCKVKKK VERDGIDFNY 180 LITTYEGKHN HESPFIINCH EKPTVDQWTL QADSFW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-23 | 124 | 194 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-23 | 124 | 194 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804802.1 | 1e-141 | PREDICTED: probable WRKY transcription factor 51 isoform X2 | ||||
Refseq | XP_016487859.1 | 1e-141 | PREDICTED: probable WRKY transcription factor 51 isoform X2 | ||||
Swissprot | Q93WU9 | 3e-34 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A1S4BG69 | 1e-140 | A0A1S4BG69_TOBAC; probable WRKY transcription factor 51 isoform X2 | ||||
TrEMBL | A0A1U7YL53 | 1e-140 | A0A1U7YL53_NICSY; probable WRKY transcription factor 51 isoform X2 | ||||
STRING | XP_009804801.1 | 1e-136 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13494 | 12 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 2e-14 | WRKY DNA-binding protein 51 |
Publications ? help Back to Top | |||
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