PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05057g04016.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 216aa MW: 24820.2 Da PI: 6.9527

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05057g04016.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.4	1.3e-27	134	192	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+W KYG+K+vk++++pr+YY+C+s gC+vkkkver+ d +++++tYeg+Hnhe Niben101Scf05057g04016.1 134 LDDGYKWTKYGKKKVKSNTNPRNYYKCSSGGCKVKKKVERDGIDFNYLITTYEGKHNHE 192 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-28	120	194	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-24	127	194	IPR003657	WRKY domain
PROSITE profile	PS50811	28.851	129	194	IPR003657	WRKY domain
SMART	SM00774	2.4E-27	134	193	IPR003657	WRKY domain
Pfam	PF03106	4.3E-21	135	192	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MFGSSTFQET INFSHQTINP NFAFSPLINM NQDHGHNMYQ DFDTSFIDQL INDGEKYSNS 60 NNSFNSTSLY SQNPFMQQEI STSTYSGNSS ASSFDATPTN IHMNENSSNK GIEKEKKTEK 120 HAIAFRTKTE LETLDDGYKW TKYGKKKVKS NTNPRNYYKC SSGGCKVKKK VERDGIDFNY 180 LITTYEGKHN HESPFIINCH EKPTVDQWTL QADSFW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-23	124	194	7	77	Probable WRKY transcription factor 4
2lex_A	1e-23	124	194	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804802.1	1e-141	PREDICTED: probable WRKY transcription factor 51 isoform X2
Refseq	XP_016487859.1	1e-141	PREDICTED: probable WRKY transcription factor 51 isoform X2
Swissprot	Q93WU9	3e-34	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A1S4BG69	1e-140	A0A1S4BG69_TOBAC; probable WRKY transcription factor 51 isoform X2
TrEMBL	A0A1U7YL53	1e-140	A0A1U7YL53_NICSY; probable WRKY transcription factor 51 isoform X2
STRING	XP_009804801.1	1e-136	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13494	12	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-14	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]