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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Niben101Scf04953g05009.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
C2H2 |
| Protein Properties |
Length: 494aa MW: 54615.4 Da PI: 9.2805 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf04953g05009.1 | genome | BTI | - |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.6 | 9.6e-05 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C+k F r nL+ H r H
Niben101Scf04953g05009.1 65 FFCEICNKGFQRDQNLQLHRRGH 87
67*******************88 PP
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| 2 | zf-C2H2 | 12.8 | 0.00036 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k + +s+ k H +t+
Niben101Scf04953g05009.1 142 WKCEKCSKKYAVQSDWKAHSKTC 164
58*****************9998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010075 | Biological Process | regulation of meristem growth |
| GO:0045604 | Biological Process | regulation of epidermal cell differentiation |
| GO:0048364 | Biological Process | root development |
| GO:0051302 | Biological Process | regulation of cell division |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 494 aa
Download sequence Send
to blast |
MMSGDVFSFP SSVKAVLPQH ELQTNPNPRP NPSSSKKRRN LPGTPDPDAE VIALSPKSLM 60
ATNRFFCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKDE IVKKKVYICP EKTCIHHDAS 120
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK 180
DSFITHRAFC DALAEESSRI TSVGANNLNF PNISDALLNQ QSNLHGISQI GTFYRPEFGN 240
MATGNSLNPQ QQKPRLSLWL DQANNNPLQM SANSNLFEST TTSGFVDMMQ MPSSNVFGSS 300
STAADFSLSS SQGTSMAETL TSLYSDSTQN NHLAKSSTPM SATALLQKAA QMGSTKSNQS 360
TFFSNSFNLM SSSSSSPSNT PTFRSLHSSE TIDQKFPKIS EDYTVSLAED NGELILCTNF 420
SSSGNTKAIN LDQAITQTVG MRTPVVPMNM QQGMNNCLTR DFLGIRNEPF LSQEMAKFAS 480
MSSAMGLSHY SSSH
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:28211915}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Not regulated by SCR and SHR. {ECO:0000269|PubMed:21935722}. |
| Publications
? help Back to Top |
- Moreno-Risueno MA, et al.
Transcriptional control of tissue formation throughout root development.
Science, 2015. 350(6259): p. 426-30
[PMID:26494755] - Hirano Y, et al.
Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD.
Nat Plants, 2017. 3: p. 17010
[PMID:28211915] - Kobayashi A,Miura S,Kozaki A
INDETERMINATE DOMAIN PROTEIN binding sequences in the 5'-untranslated region and promoter of the SCARECROW gene play crucial and distinct roles in regulating SCARECROW expression in roots and leaves.
Plant Mol. Biol., 2017. 94(1-2): p. 1-13
[PMID:28324206] - Long Y, et al.
In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
Nature, 2017. 548(7665): p. 97-102
[PMID:28746306] - Bustillo-Avendaño E, et al.
Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
Plant Physiol., 2018. 176(2): p. 1709-1727
[PMID:29233938]
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