PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04907g01013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 560aa    MW: 62988.9 Da    PI: 6.0897
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04907g01013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.96.1e-21124225199
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+kvl+ sd++++  l++ ++ a ++       ++k+ + +l+ +d++g +W++ + +r++++r++ltkGW++Fv +++L +gD+
  Niben101Scf04907g01013.1 124 FCKVLIASDTNSNWGLTVRREDAIKCfppldiTKQKPIQ-ELIAKDLNGSEWRFCHVFRGQPRRHLLTKGWSKFVASKRLVAGDS 207
                               99****************************985555564.9******************************************** PP

                               EEEEE-SSSEE..EEEEE-S CS
                        B3  80 vvFkldgrsefelvvkvfrk 99 
                               v+F   +  ++el+v+v+r+
  Niben101Scf04907g01013.1 208 VIFL--WGGNGELCVGVRRQ 225
                               ****..6678999****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-27118228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-34118238IPR015300DNA-binding pseudobarrel domain
CDDcd100178.25E-21122224No hitNo description
PROSITE profilePS5086311.73124226IPR003340B3 DNA binding domain
SMARTSM010191.0E-17124226IPR003340B3 DNA binding domain
PfamPF023621.9E-18124225IPR003340B3 DNA binding domain
PfamPF065071.0E-4249280IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MDGGIGSSHL QQQNHVLVEG DYMYRELWKA CAGPMVDLPI VGERIYYFPM THMELLKESA  60
DEIVPSLDLP TDILCRVVNI QLRVEPATDE VYAHITLLPE ENQSDQTTPD AWSPQPLNSQ  120
FHSFCKVLIA SDTNSNWGLT VRREDAIKCF PPLDITKQKP IQELIAKDLN GSEWRFCHVF  180
RGQPRRHLLT KGWSKFVASK RLVAGDSVIF LWGGNGELCV GVRRQAHQRH NIGSSPVSSQ  240
TVQGVLAVVS HAFATGSLFS VYYQPRKSRF ILSLNKYLEP NREKPSNQDL AQIASNSLPT  300
NQASVDVLDC DIVSDIFLAA HPLFLQNTPE SNGNCVGVAS TVQNFEGWPE PQWESITTYP  360
QQPIPEPSAT TSTLQPTDIL QAMCTFSNPR QLPTEGRGCG SEHVPWAGYE VAQQYVPILS  420
RVIMRYPSTI YGFKAVTGVL QSVYLEMLAK LVDLLEKCRI RSMDNRNQFQ VIKQYLVDLK  480
FIGIDISWIE TRLAQIDEVL KMEKLIQHQH TLAHRIDETQ FTLGQLNQEL GSVRKELEEL  540
THKVGPSPPS KDCSILEGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1011828414287Auxin response factor 1
4ldw_A1e-1011828414287Auxin response factor 1
4ldw_B1e-1011828414287Auxin response factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783661.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016464700.10.0PREDICTED: auxin response factor 1-like isoform X1
TrEMBLA0A1S3ZJL50.0A0A1S3ZJL5_TOBAC; auxin response factor 1-like isoform X1
TrEMBLA0A1U7X1W80.0A0A1U7X1W8_NICSY; auxin response factor 1-like
STRINGXP_009783661.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14681810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.41e-100auxin response factor 1