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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04889g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HRT-like | ||||||||
Protein Properties | Length: 423aa MW: 47187.6 Da PI: 10.1833 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 49.3 | 8.3e-16 | 272 | 302 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG++l++GsvC r+P+ g+KRC+eHKG+++ Niben101Scf04889g00021.1 272 ICGLALGHGSVCIRPPITGNKRCAEHKGRKV 302 8***************************986 PP | |||||||
2 | HRT-like | 40.8 | 3.9e-13 | 355 | 381 | 2 | 28 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 CG++l +Gs+C+r+P +g+KRC++H G Niben101Scf04889g00021.1 355 CGATLLNGSFCRRKPSEGNKRCWQHNG 381 *************************87 PP | |||||||
3 | HRT-like | 38.5 | 1.9e-12 | 399 | 423 | 2 | 26 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeH 26 CG++l +Gs+C+r+P +g+KRC++H Niben101Scf04889g00021.1 399 CGATLLNGSFCRRKPSEGNKRCWQH 423 ************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00719 | 6.16E-4 | 88 | 128 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MEATNRSLTV RLNREDCKRT KHDSAFSDWK ILIGPNDWTD YLLRKEGAEK YRTQNLPNCT 60 WCSGVYELGI AVSRRPAGRE ASRLDPDYIV PVYVGKSDNV RTRLQRYGRE GAHLENGHSN 120 SELHGQEHVS ASKRAGLFTE AFSRGFSIVY RWAPMNGNKD AEKTEAQLLD RFDYAWNKGG 180 NGVRRHNDVL RKLDGISKAT RLPTLVRKLQ LSLEKQKGVR IQACKPLLLE NGDDFHDTFK 240 STYFLPKIVK FGRSQPRIVS VSSNVNNDPN NICGLALGHG SVCIRPPITG NKRCAEHKGR 300 KVNGIEHKGL RVKEPISKQL GAEIPSVFAG PATKISCEKK HCNIDIPSVN HSPACGATLL 360 NGSFCRRKPS EGNKRCWQHN GAEIPSLFAG PSVNHSPACG ATLLNGSFCR RKPSEGNKRC 420 WQH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019247604.1 | 0.0 | PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like isoform X1 | ||||
TrEMBL | A0A1J6IP26 | 0.0 | A0A1J6IP26_NICAT; Protein effector of transcription 2 | ||||
STRING | XP_009779863.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7741 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 9e-82 | effector of transcription2 |