PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04889g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HRT-like
Protein Properties Length: 423aa    MW: 47187.6 Da    PI: 10.1833
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04889g00021.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like49.38.3e-16272302131
                  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                               iCG++l++GsvC r+P+ g+KRC+eHKG+++
  Niben101Scf04889g00021.1 272 ICGLALGHGSVCIRPPITGNKRCAEHKGRKV 302
                               8***************************986 PP

2HRT-like40.83.9e-13355381228
                  HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                               CG++l +Gs+C+r+P +g+KRC++H G
  Niben101Scf04889g00021.1 355 CGATLLNGSFCRRKPSEGNKRCWQHNG 381
                               *************************87 PP

3HRT-like38.51.9e-12399423226
                  HRT-like   2 CGviledGsvCkrqPvkgRKRCeeH 26 
                               CG++l +Gs+C+r+P +g+KRC++H
  Niben101Scf04889g00021.1 399 CGATLLNGSFCRRKPSEGNKRCWQH 423
                               ************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd007196.16E-488128No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MEATNRSLTV RLNREDCKRT KHDSAFSDWK ILIGPNDWTD YLLRKEGAEK YRTQNLPNCT  60
WCSGVYELGI AVSRRPAGRE ASRLDPDYIV PVYVGKSDNV RTRLQRYGRE GAHLENGHSN  120
SELHGQEHVS ASKRAGLFTE AFSRGFSIVY RWAPMNGNKD AEKTEAQLLD RFDYAWNKGG  180
NGVRRHNDVL RKLDGISKAT RLPTLVRKLQ LSLEKQKGVR IQACKPLLLE NGDDFHDTFK  240
STYFLPKIVK FGRSQPRIVS VSSNVNNDPN NICGLALGHG SVCIRPPITG NKRCAEHKGR  300
KVNGIEHKGL RVKEPISKQL GAEIPSVFAG PATKISCEKK HCNIDIPSVN HSPACGATLL  360
NGSFCRRKPS EGNKRCWQHN GAEIPSLFAG PSVNHSPACG ATLLNGSFCR RKPSEGNKRC  420
WQH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247604.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like isoform X1
TrEMBLA0A1J6IP260.0A0A1J6IP26_NICAT; Protein effector of transcription 2
STRINGXP_009779863.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77412330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.19e-82effector of transcription2