PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04886g04001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 391aa MW: 41547.8 Da PI: 9.3761

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04886g04001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.5	1.4e-38	79	139	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+alkcprC+s+ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGg++r+nk+sss Niben101Scf04886g04001.1 79 ETALKCPRCESSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGSCRRNKRSSS 139 6789*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	66	129	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-32	81	136	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.301	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MVFSSIPAYL DPANWQQQSG GSIPNHHQFT SPLSQTATPP PVPPPPPPLQ PHGSGGGAGS 60 IRPGSMADRA RLANIPMPET ALKCPRCESS NTKFCYFNNY SLSQPRHFCK TCRRYWTRGG 120 ALRNVPVGGS CRRNKRSSSK SNNNNNNNTS KSPASSTSTD SRQAANNNSG STSTISSHSN 180 SFSGPTSADS LLGLMSSRIP PLRFLSPLGQ LTDHHHHQFS TPVNNMNFST SGNVLGGTSE 240 GMMVNNNNLL GAGANVGAGA GGGVASLSSS VNVEHWRMQQ QMAHQFPNFL GGFDPSNLPS 300 GICSYQFQGG VNEGVQFLGG NESTTSQIRP KISTSMLNQM ASVKMEDNNH NQDQSALSRQ 360 LLGIQGNENW NTACAWSDLS ASFSSSTSNA L

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MVFSSIPAYL DPANWQQQSG GSIPNHHQFT SPLSQTATPP PVPPPPPPLQ PHGSGGGAGS  60
IRPGSMADRA RLANIPMPET ALKCPRCESS NTKFCYFNNY SLSQPRHFCK TCRRYWTRGG  120
ALRNVPVGGS CRRNKRSSSK SNNNNNNNTS KSPASSTSTD SRQAANNNSG STSTISSHSN  180
SFSGPTSADS LLGLMSSRIP PLRFLSPLGQ LTDHHHHQFS TPVNNMNFST SGNVLGGTSE  240
GMMVNNNNLL GAGANVGAGA GGGVASLSSS VNVEHWRMQQ QMAHQFPNFL GGFDPSNLPS  300
GICSYQFQGG VNEGVQFLGG NESTTSQIRP KISTSMLNQM ASVKMEDNNH NQDQSALSRQ  360
LLGIQGNENW NTACAWSDLS ASFSSSTSNA L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019250522.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1J6J1N7	0.0	A0A1J6J1N7_NICAT; Dof zinc finger protein dof2.4
STRING	XP_009758525.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	3e-40	DNA binding with one finger 2.4