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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04748g02016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 350aa MW: 39910.7 Da PI: 8.2158 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.9 | 9e-14 | 11 | 93 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 fk +k+g l +p f+ ++ + + +++ ++ + +++W vk+ ++++ l++GW++F+++++L+ gD++vF ++g+ Niben101Scf04748g02016.1 11 FKPV--MPDFKNG-LKIPLGFL-KYlKDQ--DHIEHVILRTGSKKWLVKV--NGQR----LEEGWEKFAEEHDLQLGDMLVFGHEGD 85 5555..3456666.********.663444..5678888899*********..8887....*************************** PP SEE..EEE CS B3 88 sefelvvk 95 +efe v k Niben101Scf04748g02016.1 86 MEFEHVPK 93 99987655 PP | |||||||
2 | B3 | 43.2 | 7.3e-14 | 91 | 166 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +pk fa e+g+++++ t++++d + rsWe++l ++g++++++ W++F+ an LkegD ++F+ + ++++ +k+++ Niben101Scf04748g02016.1 91 VPKLFACENGLSNRK-CTIVIRD-EQRSWEFRL--YSCGGSTFIGGEWRKFCAANFLKEGDHIMFEIFS-KGEKTILKFCD 166 6999*99**999765.5999999.779******..999999*************************655.55555777776 PP | |||||||
3 | B3 | 49.6 | 7.2e-16 | 223 | 305 | 5 | 90 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++++ l+ g l +pk+fa ++g+k++++ l+++de+ rsW+++l + ++ ++++++G ++F +n LkegD ++F+++ s+ Niben101Scf04748g02016.1 223 TIRPYCLTYGFLNVPKHFACANGLKPNKKCILIIRDERQRSWTLRL--SVCKTQVYIGDGLRKFIGDNCLKEGDRIMFEVVT-SG 304 56789999999***********************************..999999*************************765.44 PP E CS B3 90 f 90 + Niben101Scf04748g02016.1 305 E 305 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-16 | 3 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.65E-16 | 3 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.53E-11 | 8 | 85 | No hit | No description |
SMART | SM01019 | 2.3E-8 | 10 | 89 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.828 | 74 | 170 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-13 | 90 | 165 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.1E-13 | 90 | 165 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.78E-11 | 91 | 166 | No hit | No description |
SMART | SM01019 | 0.0013 | 91 | 168 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.8E-12 | 91 | 166 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.9E-17 | 217 | 311 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-16 | 217 | 311 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.165 | 219 | 314 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-13 | 220 | 314 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-14 | 223 | 307 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.19E-10 | 232 | 299 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MKISPKKPHF FKPVMPDFKN GLKIPLGFLK YLKDQDHIEH VILRTGSKKW LVKVNGQRLE 60 EGWEKFAEEH DLQLGDMLVF GHEGDMEFEH VPKLFACENG LSNRKCTIVI RDEQRSWEFR 120 LYSCGGSTFI GGEWRKFCAA NFLKEGDHIM FEIFSKGEKT ILKFCDLRGE ASFQPEGKKT 180 NLDTERVSTQ EKPSPSIKSS NKASADAKAA AHEPFGHSKF VCTIRPYCLT YGFLNVPKHF 240 ACANGLKPNK KCILIIRDER QRSWTLRLSV CKTQVYIGDG LRKFIGDNCL KEGDRIMFEV 300 VTSGETPIWK FQVVTSGKDS NEEVNILGRV PRITEAIDNN GVDDGQENEH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018625377.1 | 1e-153 | PREDICTED: putative B3 domain-containing protein REM15 isoform X1 | ||||
TrEMBL | A0A1J6HXT2 | 1e-150 | A0A1J6HXT2_NICAT; Putative b3 domain-containing protein rem15 | ||||
STRING | XP_009771718.1 | 1e-149 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31650.1 | 2e-30 | B3 family protein |