PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04748g01014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 244aa MW: 28247 Da PI: 7.0096 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.7 | 2.9e-15 | 11 | 94 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 fk + +k+g l +p f+ ++ +g k+ + + ++g++W vk+ ++++ l++GW +F++++ L+ gD++vF+++g+ Niben101Scf04748g01014.1 11 FKPI--QSDFKQG-LKIPVGFL-KYlMGYKN---EYAILRKDGKKWLVKV--NGRR----LQEGWGKFAEEQSLELGDMLVFRHEGN 84 5555..5556666.********.66544433...5788899*********..8888....*************************99 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +ef v++f++ Niben101Scf04748g01014.1 85 MEF--EVTIFDS 94 999..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-21 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-20 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.407 | 7 | 95 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.34E-16 | 8 | 93 | No hit | No description |
SMART | SM01019 | 2.9E-15 | 10 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-12 | 11 | 94 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MKITPAKPHF FKPIQSDFKQ GLKIPVGFLK YLMGYKNEYA ILRKDGKKWL VKVNGRRLQE 60 GWGKFAEEQS LELGDMLVFR HEGNMEFEVT IFDSSHCDRE YAEYLLDEEE ANKVEFKVGD 120 GRKTKFWQDI WHGNSPIKGS FPDLHRITYS SNALISDFRL DHGWLINFRR NLNDWEVDRH 180 LSLLDFIHRS SCSSSPTSDC LIWTANWKGT FSVKSCYAIL TQSNPLEYSL ALETHLEGAG 240 PSQG |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 1e-19 | B3 family protein |