PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04665g02022.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 653aa    MW: 73871.5 Da    PI: 7.0489
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04665g02022.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.11.2e-10350389541
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                               k  rr+++NReAAr+sR+RKka++++Le    + ++Le+e
  Niben101Scf04665g02022.1 350 KTLRRLAQNREAARKSRLRKKAYVQQLESsriRLAQLEQE 389
                               7789***********************9633356666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.2E-8341394No hitNo description
SMARTSM003384.8E-7346418IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.933348392IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-7350387No hitNo description
CDDcd147087.54E-23350402No hitNo description
PfamPF001708.4E-8350389IPR004827Basic-leucine zipper domain
PROSITE patternPS000360353368IPR004827Basic-leucine zipper domain
PfamPF141441.8E-28441513IPR025422Transcription factor TGA like domain
PfamPF141444.3E-28533604IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MGSYSTEEEN NLFIGVHFMA SSNKNNDDLL LNNNSQISFG SQQQQQFFHS PQQQHDQHQL  60
QNNSNQISFG LLQQQSSSSS NPGNFINKDN NGAYDLGELD QALFLYLDGQ EPSSIQDQRQ  120
NSGMRPPTLN IFPSQPMHIE PSSTKVNNGL VSQAASGSKK SSQPSMAKSD VVPSASGPEP  180
PKTAKQQQFF HSPQQQHDQH QLQNNSNQIS FGLLQQQSSS SSNPGNFINK DNNGAYDLGE  240
LDQALFLYLD GQEPSSIQDQ RQNSGMRPPT LNIFPSQPMH IEPASTKVNN GLVSQATSGS  300
KKSSQPSMAK TDVVPSASGP EPPKTAKREG IRKGPTSSSE QDAPKTPDPK TLRRLAQNRE  360
AARKSRLRKK AYVQQLESSR IRLAQLEQEI QRARSQGFYV GGNALQAGEQ GLAVNMANIS  420
SDAAIFDLEY ARWLEEHHRL LCELRNAVQE HLQENELRIY VENCVTHYDE IMNLKCMLSK  480
SDVFHLVSGL WKTPAERCFL WMGDFRPSDL LKVHAAIFDL EYARWLEEHH RLLCELRNAV  540
QEHLQENELR IYVENCVTHY DEIMNLKCML SKSDVFHLVS GLWKTPAERC FLWMGDFRPS  600
DLLKADNLRH QTIHRLHQIL TTRQAARCFL AIGEYFHRLR ALSSLWLARP RQE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798380.10.0PREDICTED: transcription factor HBP-1b(c38)-like
RefseqXP_016463456.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A1S3ZGP20.0A0A1S3ZGP2_TOBAC; transcription factor HBP-1b(C38)-like
TrEMBLA0A1U7YHS60.0A0A1U7YHS6_NICSY; transcription factor HBP-1b(C38)-like
STRINGXP_009798380.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22792145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-120bZIP family protein