PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04664g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 326aa    MW: 36246.9 Da    PI: 7.5791
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04664g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.6e-19244277134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++C++ kTp+WR gp g+ktLCnaCG+++++ +
  Niben101Scf04664g02003.1 244 CTHCQVQKTPQWRAGPLGPKTLCNACGVRFKSGR 277
                               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.7E-805322IPR016679Transcription factor, GATA, plant
SuperFamilySSF577161.52E-14236300No hitNo description
SMARTSM004013.7E-15238292IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.149238274IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14241275IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.55E-13243292No hitNo description
PfamPF003201.2E-16244277IPR000679Zinc finger, GATA-type
PROSITE patternPS003440244269IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MELIEARALK SSFLSDMAMK TSQQVFLDDI WCVTGINNVP SDDFSVDDLL DFSDKDFKDG  60
QSLQELHEDD EKDSFSGSSQ HRNSQVSNFS CMDSFSGELP VPVDELENLE WLSQFVDDST  120
SDFSLLCPAG RFKDKTGGFQ VSRSEPVVRP VFQKLRVPCF PLPVVQKPRT KRSRPAGRKW  180
SFSSPTVSAD SCSPTSSSYG SSPFPSVLYP NPVLDGDLFC SVEKPPLKKR KKISTAETGS  240
GRRCTHCQVQ KTPQWRAGPL GPKTLCNACG VRFKSGRLFP EYRPACSPTF SQEVHSNSHR  300
KVLEMRRKKE TGDIVDSGLA TMISTC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227231KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802570.10.0PREDICTED: GATA transcription factor 5-like
TrEMBLA0A1U7YUW40.0A0A1U7YUW4_NICSY; GATA transcription factor
STRINGXP_009802570.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-57GATA transcription factor 5