PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04627g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 281aa    MW: 31926.4 Da    PI: 7.6386
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04627g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.26.5e-12165220560
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                               ++ +r+++NRe+ArrsR RK++ ++ L++ +  L+  N++L +++   + +++ ++
  Niben101Scf04627g00001.1 165 RKRKRMISNRESARRSRMRKQKHLDTLRNQANRLKVANRDLTNRIHLVTSHCQLVQ 220
                               5789***********************************************99544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-10161225IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.622163209IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.7E-9164217No hitNo description
SuperFamilySSF579591.62E-10165216No hitNo description
PfamPF001704.9E-10165219IPR004827Basic-leucine zipper domain
CDDcd147021.22E-19166217No hitNo description
PROSITE patternPS000360168183IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MLSAFPAIIL SSDGTFSNQF SSFNDNFIPW DYVDSTFTFP DQVVESIFSP NQTPIREPVI  60
SHSGSGSDNS KPDSPNSSFR SDEPNMNNHS PWECLESGFI LPDQGVESVF QPKRSPTPEP  120
VLSNSGSDPD KYITDSPNSS SGSDELTMNN DGPNSGSDIL VINERKRKRM ISNRESARRS  180
RMRKQKHLDT LRNQANRLKV ANRDLTNRIH LVTSHCQLVQ RNNQMLRTES VFLQQRLENI  240
RAILLARQLQ QQSYNSSAWP CNNYVQQRPQ IIINQPIINH H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164185RKRKRMISNRESARRSRMRKQK
2177184RRSRMRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804217.11e-166PREDICTED: G-box-binding factor 1-like
TrEMBLA0A1U7YJF01e-165A0A1U7YJF0_NICSY; G-box-binding factor 1-like
STRINGXP_009804217.11e-166(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28202251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.16e-20basic leucine-zipper 7