PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04563g02002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 320aa MW: 36742.9 Da PI: 6.911

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04563g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.3e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++F++a+e+LGG++kAtPk +l++m+v gLt++hvkSHLQ+YR+ Niben101Scf04563g02002.1 19 PRLRWTPDLHHCFLHAIEKLGGQNKATPKLVLQMMDVRGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-30	15	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.057	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-15	17	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-24	19	73	IPR006447	Myb domain, plants
Pfam	PF00249	7.8E-9	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MGNCGRNGGV RQYIRSKVPR LRWTPDLHHC FLHAIEKLGG QNKATPKLVL QMMDVRGLTI 60 SHVKSHLQMY RSMKSEVNRQ DRSSTQQRKQ SLENHDCLQQ EGCVEQQKLL VYHPSFSPIE 120 RSDYPYFSSA QPTKSQRIRE AVANQYSKDD YIHSMADKSV LKERTKEGEN GFIWQQTCGE 180 SETERETAHP ALYNSTHFSL PQDFFQNFNP IVQESEFFKA AKQPDSKRES SKKCKFEGSR 240 KIENAEEEEE EKEDDCSLSL GLSMLHSSIQ RSNTSSTISE ISEAISYSGC NLNHHEYHWI 300 SSSEKHSVIN LDLSIALCSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766441.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
TrEMBL	A0A1U7VNA7	0.0	A0A1U7VNA7_NICSY; putative Myb family transcription factor At1g14600 isoform X2
STRING	XP_009766440.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5433	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	3e-34	G2-like family protein