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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04436g06001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 293aa MW: 33321.6 Da PI: 10.1557 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.7 | 3.7e-17 | 142 | 232 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k +++s+v + +l lp +f+e+h ++++ + l de+g ++e + +k+ + l++GW+ F+ +++L++gD ++F+l+ Niben101Scf04436g06001.1 142 FIKSMVRSHVYSCFWLGLPTRFCEDHLP--KSTVNVLLVDEEGSEYEALF--IGKRTG--LSGGWRAFALDHKLDDGDALIFELV 220 89************************53..36789***************..555544..***********************99 PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + ++f +v ++r+ Niben101Scf04436g06001.1 221 EATKF--KVYIVRT 232 87777..8888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-21 | 134 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.06E-23 | 136 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.05E-26 | 140 | 231 | No hit | No description |
SMART | SM01019 | 3.9E-22 | 142 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-15 | 142 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.338 | 142 | 233 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MANGNGTTSY EEVRRQRVLD NKKRFEDLGI LSISKNLSDL AKSEKKSDKK YEVTRVRQKA 60 NDVYMLEPRR SGRARNPVPS YRDEIDMELP SFRNRSRLSS SWASYLARPL EEVKMASRQA 120 RAQAIKSAEK LQSNLQSANP SFIKSMVRSH VYSCFWLGLP TRFCEDHLPK STVNVLLVDE 180 EGSEYEALFI GKRTGLSGGW RAFALDHKLD DGDALIFELV EATKFKVYIV RTSYCSSRED 240 KSGAEKEENE AEETSKSVTK KRKKSSKQSE VPTVAKEEIS VAASATRRST RRK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 259 | 263 | KKRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016458586.1 | 0.0 | PREDICTED: putative B3 domain-containing protein At5g58280 | ||||
Refseq | XP_016458587.1 | 0.0 | PREDICTED: putative B3 domain-containing protein At5g58280 | ||||
Swissprot | Q9FHB2 | 6e-68 | Y5828_ARATH; Putative B3 domain-containing protein At5g58280 | ||||
TrEMBL | A0A1S3Z2A4 | 0.0 | A0A1S3Z2A4_TOBAC; putative B3 domain-containing protein At5g58280 | ||||
STRING | XP_009793972.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12510 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 2e-69 | B3 family protein |
Publications ? help Back to Top | |||
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