 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Niben101Scf04410g05002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 208aa MW: 24409.9 Da PI: 9.9596 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf04410g05002.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93 | 1.4e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+ey++
Niben101Scf04410g05002.1 9 KRIENKINRQVTFSKRRYGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAT 59
79***********************************************86 PP
|
| 2 | K-box | 105.9 | 4.7e-35 | 82 | 175 | 8 | 100 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91
+ ++++ s++ e+akLk+++e +qr+qRh++GedL+sLs+keLq+Le+qL+++lk+ Rs+Kn+l++e+i+elqkk k+lqe+n
Niben101Scf04410g05002.1 82 AnTDHSSPGSWTVEHAKLKARLEVIQRNQRHYMGEDLNSLSMKELQNLEHQLDSALKHTRSRKNQLMHESISELQKKDKALQEQN 166
4466677889*************************************************************************** PP
K-box 92 kaLrkklee 100
++L+kk++e
Niben101Scf04410g05002.1 167 NQLSKKVKE 175
******986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 31.931 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 7.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 2.35E-32 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 6.64E-39 | 2 | 79 | No hit | No description |
| PRINTS | PR00404 | 6.6E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.3E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.6E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.6E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 7.5E-29 | 86 | 173 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 16.561 | 89 | 179 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 208 aa
Download sequence Send
to blast |
MGRGRVQLKR IENKINRQVT FSKRRYGLLK KAHEISVLCD AEVGLIVFST KGKLFEYATD 60
SCMERILEKY ERYSYAERQL VANTDHSSPG SWTVEHAKLK ARLEVIQRNQ RHYMGEDLNS 120
LSMKELQNLE HQLDSALKHT RSRKNQLMHE SISELQKKDK ALQEQNNQLS KKVKERKKEL 180
AQQNQWEQQK ELNSPNLGSV YIYCSICL
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 2e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 2e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-23 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
