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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04396g04001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 73aa MW: 8039.51 Da PI: 10.8878 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.6 | 6e-17 | 12 | 58 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +i ++ r vtfskRr+g++KKA EL +++ +va ++fs+tgk y+ Niben101Scf04396g04001.1 12 KITKETSRMVTFSKRRKGLFKKAGELESMTGSRVAAVVFSPTGKPYT 58 688999*************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-21 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.282 | 3 | 58 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 5.49E-22 | 4 | 58 | No hit | No description |
SuperFamily | SSF55455 | 7.06E-20 | 4 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-15 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-22 | 12 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-15 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-15 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
MGTGKKKIQI EKITKETSRM VTFSKRRKGL FKKAGELESM TGSRVAAVVF SPTGKPYTCG 60 NFLGFKIIPA PEE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009796162.1 | 6e-36 | PREDICTED: MADS-box transcription factor 23-like | ||||
Refseq | XP_019266521.1 | 6e-36 | PREDICTED: MADS-box transcription factor 23-like | ||||
Swissprot | Q4PSU4 | 9e-14 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1U7XVX1 | 1e-34 | A0A1U7XVX1_NICSY; MADS-box transcription factor 23-like | ||||
TrEMBL | A0A314L0I9 | 1e-34 | A0A314L0I9_NICAT; Uncharacterized protein | ||||
STRING | XP_009796162.1 | 2e-35 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-12 | AGAMOUS-like 29 |
Publications ? help Back to Top | |||
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