PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Niben101Scf04382g01003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 744aa MW: 84114.2 Da PI: 6.6622

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04382g01003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	389.5	3.8e-119	372	741	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 ++ L+ cA+av+++d + a+++L+++++++s+ gd mqRla+y+ ++L+ar+a+s++++y al + +ts +++l+a++lf Niben101Scf04382g01003.1 372 RTILTLCAQAVAADDRRTANEFLKQIRQNSSSMGDGMQRLAHYVSNGLEARMAGSGTQIYTALISMPTS---AADVLKAYQLFLA 453 67899********************************************************999998...9******** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169 ++P+ k+s++ N++I++ +e++++vHiiDf+i++G+QWp+++q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++A Niben101Scf04382g01003.1 454 ACPFRKLSNFFSNKTIMNVAERAKTVHIIDFGIMYGFQWPCFIQRLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGKRLANYA 538 **************************************************************9************** PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 e+++vpfef++ +ak++e++++e+L+++++E+l+Vn+ ++ +llde+v ++s+rd vL+l+++l+P+v++ + +n++ F Niben101Scf04382g01003.1 539 ESFNVPFEFKA-IAKKWETIKMEDLEIRKDEVLVVNCLYRFRNLLDETVVVNSPRDIVLNLIRTLKPDVFIQGIVNGAYNAPFFI 622 *******.7******************************************************************** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 +rf eal +ys++fd+lea++pre +er+ +E+ ++gre++nv+ace aer+er et+++W+ r +aGF+++pl+e+++ +k Niben101Scf04382g01003.1 623 TRFREALFHYSSVFDMLEANIPREIHERMLIEKIIFGREVMNVIACEAAERIERPETYKQWKVRNIRAGFRQLPLNEEIMRIVKE 707 ********************************************************************************* PP GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ +++d + ++ + ++l++gWk+r ++++S W+ Niben101Scf04382g01003.1 708 RVKAYHKD-FVIDVDGHWLLQGWKGRIVYALSTWK 741 **77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.848	345	722	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-116	372	741	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence Send to blast
MVMDKNYYKG LYEATSAIQL KDEDLSFFPD LNLINNLRVS DHTLVQRNHV NIPQFQPNVL 60 VPSAVDNSHE DYDFSDVVLK YISQMLMEEN IEEKACMFQE SAALQAAERS FYEVIGEKYP 120 PSSNREMPNL GQIEGQYPVD SSSSNYYSCI IDVIDGLLCP NWNPDIGGDS DSSHAQHFPV 180 DGAVASTSQS SHSSPSSSGT VTDAHLDSPV SSIQIPDIFS DSESIMQFKK GVEEASKFLP 240 TGNSLLLDVR YNVVGKEDNE YGKNAVVKVE NRGKHQSPEG SRGKKNVHHD DFDAMEERSH 300 KQSAVFSEST VRSEMFDRVL LCSGGKNESA LRESWQTVSS KNAPEDGLPK GSNGRKSRGK 360 RQGSKRDTVD LRTILTLCAQ AVAADDRRTA NEFLKQIRQN SSSMGDGMQR LAHYVSNGLE 420 ARMAGSGTQI YTALISMPTS AADVLKAYQL FLAACPFRKL SNFFSNKTIM NVAERAKTVH 480 IIDFGIMYGF QWPCFIQRLS SRPGGPPKLR ITGIDFPNPG FRPAERVEET GKRLANYAES 540 FNVPFEFKAI AKKWETIKME DLEIRKDEVL VVNCLYRFRN LLDETVVVNS PRDIVLNLIR 600 TLKPDVFIQG IVNGAYNAPF FITRFREALF HYSSVFDMLE ANIPREIHER MLIEKIIFGR 660 EVMNVIACEA AERIERPETY KQWKVRNIRA GFRQLPLNEE IMRIVKERVK AYHKDFVIDV 720 DGHWLLQGWK GRIVYALSTW KAAY

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence Send to blast

MVMDKNYYKG LYEATSAIQL KDEDLSFFPD LNLINNLRVS DHTLVQRNHV NIPQFQPNVL  60
VPSAVDNSHE DYDFSDVVLK YISQMLMEEN IEEKACMFQE SAALQAAERS FYEVIGEKYP  120
PSSNREMPNL GQIEGQYPVD SSSSNYYSCI IDVIDGLLCP NWNPDIGGDS DSSHAQHFPV  180
DGAVASTSQS SHSSPSSSGT VTDAHLDSPV SSIQIPDIFS DSESIMQFKK GVEEASKFLP  240
TGNSLLLDVR YNVVGKEDNE YGKNAVVKVE NRGKHQSPEG SRGKKNVHHD DFDAMEERSH  300
KQSAVFSEST VRSEMFDRVL LCSGGKNESA LRESWQTVSS KNAPEDGLPK GSNGRKSRGK  360
RQGSKRDTVD LRTILTLCAQ AVAADDRRTA NEFLKQIRQN SSSMGDGMQR LAHYVSNGLE  420
ARMAGSGTQI YTALISMPTS AADVLKAYQL FLAACPFRKL SNFFSNKTIM NVAERAKTVH  480
IIDFGIMYGF QWPCFIQRLS SRPGGPPKLR ITGIDFPNPG FRPAERVEET GKRLANYAES  540
FNVPFEFKAI AKKWETIKME DLEIRKDEVL VVNCLYRFRN LLDETVVVNS PRDIVLNLIR  600
TLKPDVFIQG IVNGAYNAPF FITRFREALF HYSSVFDMLE ANIPREIHER MLIEKIIFGR  660
EVMNVIACEA AERIERPETY KQWKVRNIRA GFRQLPLNEE IMRIVKERVK AYHKDFVIDV  720
DGHWLLQGWK GRIVYALSTW KAAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-54	355	740	3	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019241581.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1J6KJ68	0.0	A0A1J6KJ68_NICAT; Scarecrow-like protein 14
STRING	XP_009611175.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]