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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04371g02004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 556aa MW: 60630 Da PI: 7.4513 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 215 | 237 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Niben101Scf04371g02004.1 215 HECSICGAEFSSGQALGGHMRRH 237 78********************9 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00039 | 458 | 480 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Niben101Scf04371g02004.1 458 HECSICGAEFSSGQALGGHMRRH 480 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.0E-12 | 134 | 159 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.72 | 135 | 162 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.059 | 135 | 157 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 137 | 157 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.56E-8 | 213 | 237 | No hit | No description |
SMART | SM00355 | 0.01 | 215 | 237 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 215 | 242 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-12 | 215 | 239 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 217 | 237 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.56E-8 | 373 | 400 | No hit | No description |
Pfam | PF13912 | 2.0E-12 | 377 | 402 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.72 | 378 | 405 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.059 | 378 | 400 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 380 | 400 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.87E-5 | 455 | 482 | No hit | No description |
SMART | SM00355 | 0.01 | 458 | 480 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 458 | 485 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-12 | 458 | 482 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 460 | 480 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MEISEDSADR TLVFKGKRSK RPRQLSLVGM AVAVASTSST GGGGAGGGSS DDIGGGGEFY 60 SSSIQYSPTT SSTQISTSSE EDEDMANCLI LLAKSGRCQK LQVESTTERK MVKISSRKFT 120 EMATCTTGKA GFYVYECKTC NRTFPSFQAL GGHRTSHKKA KTIVEEKKST ADSENHDHHY 180 HQDEETSNKI NITTPTQIVN KGNSHGNFNS KPKIHECSIC GAEFSSGQAL GGHMRRHRPP 240 PTITATNSTK VTDETTSESS HNDDENSNKE KPRIILSLDL NLPAPPEDDS KFGFSANKQS 300 LVFSSAALYS PTTSSTQIST SSEEDEDMAN CLILLAKSGR CQKLQVESTT ERKMVKISSR 360 KFTEMATCTT GKAGFYVYEC KTCNRTFPSF QALGGHRTSH KKAKTIVEEK KSTADSENHD 420 HHYHQDEETS NKINITTPTQ IVNKGNSHGN FNSKPKIHEC SICGAEFSSG QALGGHMRRH 480 RPPPTITATN STKVTDETTS ESSHNDDENS NKEKPRIILS LDLNLPAPPE DDSKFGFSAN 540 KQSLVFSSAA LVDCHY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019264377.1 | 1e-175 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A314L4K6 | 1e-173 | A0A314L4K6_NICAT; Zinc finger protein zat5 | ||||
STRING | XP_009776555.1 | 1e-166 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1262 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-48 | C2H2 family protein |