PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04328g00054.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 438aa    MW: 49076.6 Da    PI: 6.974
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04328g00054.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.14.3e-115654371374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svsel..ykalppsetseknsseelaalk 82 
                               lv+lL++cAeav+ +d+++a+ lL +l+  a   g+++qR+a++f+++La rla  +  ++  y a p+ +++++  +++  al+
  Niben101Scf04328g00054.1  65 LVQLLITCAEAVACRDKARASVLLPELRASALVFGTSFQRVASCFVQGLADRLALvQPLGTvgYVATPAMNKTDMALEKKEEALR 149
                               689*************************************************998333334114444555555566999999*** PP

                      GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetg 162
                               l++e++P ++f+h++aN+ Ilea+eg++ +H++D+++s    +G QW  L+q+La+Rp+ pp +lRiT+vg+    + e+ + +g
  Niben101Scf04328g00054.1 150 LLYEICPHIQFGHFVANSSILEAFEGDSLIHVVDLGMSvglpHGHQWRRLIQSLANRPGHPPrRLRITAVGQ----NMEKFQIIG 230
                               ***********************************9884444678*************877779********....9******** PP

                      GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                               + L+ +A++lg+++ f++ v+++le+l+ ++++v  gE+l+Vn++lqlh +++es    +   +vL++v +lsPk++v+veq+++
  Niben101Scf04328g00054.1 231 DELEAYARSLGINLGFSA-VESHLENLKAKDIKVYDGEVLVVNSILQLHCVVKESRGALN---SVLQVVHELSPKILVLVEQDSS 311
                               ******************.7********************************88877777...8********************* PP

                      GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                               hn++ Fl rf+eal+yysa+fdsl++ lp+ +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  
  Niben101Scf04328g00054.1 312 HNGPFFLGRFMEALHYYSAIFDSLDVMLPKYDTRRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK-- 394
                               *********************************************************************************96.. PP

                      GRAS 333 aakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +++qak  l+kv+  +g+++ ee+++lvlgWk++p+v++S+W+
  Niben101Scf04328g00054.1 395 MVSQAKQWLAKVNaYEGFTITEEKDCLVLGWKSKPIVAASCWK 437
                               79****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.49439418IPR005202Transcription factor GRAS
PfamPF035141.5E-11265437IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MTYDMVTGFL SLEPCNGDQI GYDPLVNGLY LSHKELDYSL NPYTTVFKRN AASIQEEENG  60
EGMKLVQLLI TCAEAVACRD KARASVLLPE LRASALVFGT SFQRVASCFV QGLADRLALV  120
QPLGTVGYVA TPAMNKTDMA LEKKEEALRL LYEICPHIQF GHFVANSSIL EAFEGDSLIH  180
VVDLGMSVGL PHGHQWRRLI QSLANRPGHP PRRLRITAVG QNMEKFQIIG DELEAYARSL  240
GINLGFSAVE SHLENLKAKD IKVYDGEVLV VNSILQLHCV VKESRGALNS VLQVVHELSP  300
KILVLVEQDS SHNGPFFLGR FMEALHYYSA IFDSLDVMLP KYDTRRAKIE QFYFAEEIKN  360
IVSCEGPARV ERHERVDQWR RRMSRAGFQA APIKMVSQAK QWLAKVNAYE GFTITEEKDC  420
LVLGWKSKPI VAASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-61554369378Protein SCARECROW
5b3h_A6e-61554368377Protein SCARECROW
5b3h_D6e-61554368377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603492.10.0PREDICTED: DELLA protein RGL1-like
RefseqXP_016441386.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1S3XN640.0A0A1S3XN64_TOBAC; DELLA protein RGL1-like
STRINGXP_009603492.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-76GRAS family protein