 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf04240g02010.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 213aa MW: 25156.5 Da PI: 6.5632 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf04240g02010.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61 | 1.8e-19 | 55 | 107 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++++eq++ Le+ F k++++ e++ +LA +lgL+ rqV vWFqNrRa++k
Niben101Scf04240g02010.1 55 KRKLSEEQVNLLEQSFGKEHKLESERKDKLAYELGLDPRQVAVWFQNRRARWK 107
45899***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 119.5 | 1.7e-38 | 54 | 145 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
+kr+ls+eqv+lLE+sF +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ +++rLe+ev +
Niben101Scf04240g02010.1 54 RKRKLSEEQVNLLEQSFGKEHKLESERKDKLAYELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKTEHDTNIVDKCRLENEVLK 138
8************************************************************************************ PP
HD-ZIP_I/II 87 Lreelke 93
L+e+l+e
Niben101Scf04240g02010.1 139 LKEQLSE 145
****986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009733 | Biological Process | response to auxin |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MIMRSSMNLQ VDDQMLLISQ YYPGIYTQEL PQQGEAKPRR RRKKNKGESS GIMRKRKLSE 60
EQVNLLEQSF GKEHKLESER KDKLAYELGL DPRQVAVWFQ NRRARWKSKK LEEEYSKLKT 120
EHDTNIVDKC RLENEVLKLK EQLSEAEKEI QRLLMERCDG FNSSNSPTTS SLSMETPFLG 180
DFGMEGFDNT FYVPENTYSQ GLEWVNLYMP YDM
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 39 | 56 | RRRKKNKGESSGIMRKRK |
| 2 | 41 | 56 | RKKNKGESSGIMRKRK |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
