PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04230g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 381aa    MW: 44075.5 Da    PI: 9.8911
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04230g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-05119142123
                               EEETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                               y C  Cg++F +++ L++H +  H
  Niben101Scf04230g00002.1 119 YFCRVCGRRFYTNEKLVNHFKQiH 142
                               78*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10107.7E-761118IPR029060PIN domain-like
SuperFamilySSF576672.51E-5115145No hitNo description
PROSITE profilePS5015711.593119147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-4119144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280121142IPR007087Zinc finger, C2H2
CDDcd061677.75E-13136271No hitNo description
PfamPF019362.0E-7191273IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10107.7E-7204259IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MMKRVKASTF IHAIRSYKRF CHFEYKSHLG FGSLGSSVRT NVGIFWDLDN KPPKSFPPFE  60
AATKLKKAAG EFGVVRYTVA YANRHAFSYV PPVVRQQRKE RKTLNSLEKS GVVKVEEPYF  120
CRVCGRRFYT NEKLVNHFKQ IHEREHMKRL NQLASARGKM RVKLVARYAM KMDKYKNAVR  180
DVLTPKVGYG LADELKRAGF WVRTVSDNPQ AADVALRNHL VDVMDKRMVE CVVLVSDDSD  240
FVEVLKEARL RCLKTVVVGD CNDGALKRTA DASFSWQEIM MGKAKKEAVS VVDRWKDRDV  300
LKRLEWTYDP EVEKKQYNSK VESDDSDGLF SGEDDNKDVG ASISKEDARA WWELDSHSAI  360
DCWLQLHYFK KRRDERILGH E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019224016.10.0PREDICTED: uncharacterized protein LOC109205729
TrEMBLA0A314KWY50.0A0A314KWY5_NICAT; Uncharacterized protein
STRINGXP_009770203.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-145C2H2 family protein