PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04220g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 730aa    MW: 80186.3 Da    PI: 5.2648
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04220g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.3e-2189144156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               r++ +++t++q++eLe++F+++++p+ ++r+eL+++lg++  q+k+WFqN+R+++k
  Niben101Scf04220g00002.1  89 RKRYHRHTQHQIQELEAYFKECPHPDDKQRKELSRELGIEPLQIKFWFQNKRTQMK 144
                               789999***********************************************999 PP
2START88.11.9e-282774121117
                               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 
                               ela +a++e+v+++  +ep+W+ s     + +n++e+ ++f+++ +     +++ea+r+++vv+m++++lve+l+d++  W+ ++
  Niben101Scf04220g00002.1 277 ELAVAAMEEFVQMVHMQEPLWFPSIengtSLLNEEEYFRIFPRGIGpkpegFKTEASRETAVVIMNHVNLVEILMDVN-HWSSMF 360
                               57899********************999999************999********************************.****** PP

                               S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE CS
                     START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq 117
                                    +a+t++v+s+g      galq++ ae q++sp vp R+ +fvR++r+
  Niben101Scf04220g00002.1 361 SgvvsRASTIDVLSTGvagnfnGALQVILAEIQVPSPQVPtRECYFVRCRRR 412
                               *************************************************997 PP
3START81.32.3e-26406470142206
                               SEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 142 vvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               +vR++++pSg+li++++ng+skvtwveh++++++ +h ++r+lv+sgla+gak+w atl+rqce+
  Niben101Scf04220g00002.1 406 FVRCRRRPSGCLIQEMPNGYSKVTWVEHIEVDDSAVHDIYRPLVSSGLAFGAKRWIATLDRQCER 470
                               79*************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-2268144IPR009057Homeodomain-like
SuperFamilySSF466893.47E-1977147IPR009057Homeodomain-like
PROSITE profilePS5007117.00686146IPR001356Homeobox domain
CDDcd000862.88E-1988147No hitNo description
SMARTSM003895.0E-1988150IPR001356Homeobox domain
PfamPF000462.1E-1889144IPR001356Homeobox domain
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PROSITE profilePS5084827.078268473IPR002913START domain
SuperFamilySSF559611.92E-26268472No hitNo description
CDDcd088752.04E-104272469No hitNo description
SMARTSM002342.8E-40277470IPR002913START domain
PfamPF018524.9E-21278412IPR002913START domain
Gene3DG3DSA:3.30.530.204.5E-5350470IPR023393START-like domain
SuperFamilySSF559611.99E-26493720No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MPSRISRRAN KMSSLVVNDG TDIGFSSSGL PLGQSSSMMD SQLHSLDMLS NTSESEMPRL  60
SSEDFGSKSG NEGNSIGDEQ DFNNKSLKRK RYHRHTQHQI QELEAYFKEC PHPDDKQRKE  120
LSRELGIEPL QIKFWFQNKR TQMKTKNERS ENSQLRAENE KLSAENLRFR EALGNVSCPN  180
CGGQPPPIGE MSYDEHHLRL ENTRLREEIE RISNIASKYV GKPFSNHNNG YSPPLDLGVP  240
AFSTPQSVNG DAYGDGEDII ISSIIGPTDA EKPFIIELAV AAMEEFVQMV HMQEPLWFPS  300
IENGTSLLNE EEYFRIFPRG IGPKPEGFKT EASRETAVVI MNHVNLVEIL MDVNHWSSMF  360
SGVVSRASTI DVLSTGVAGN FNGALQVILA EIQVPSPQVP TRECYFVRCR RRPSGCLIQE  420
MPNGYSKVTW VEHIEVDDSA VHDIYRPLVS SGLAFGAKRW IATLDRQCER LASAMATNFP  480
TNDLSNMVLT NQDSRKSMLK LAERMVNSFC SGVSATAGNQ WTTLSGSGTD DNVRVMTRKS  540
VDDPGRPPGI VLSAATSFWL PISPKRVFDF LRDENTRSEW DILSNGGVVQ EMAHIANGRE  600
TGNCVSLLRV NSSNSSQSNM LILQESSTDP TNSYVIYAPV DIAAMNIVLG GGDPDFVALL  660
PSGFAILPDG PPGNGRVGSG GSLLTVAFQI LVDSIPTAKL SLGSVATVNN LIACTVERIK  720
GALLSESTPS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019223745.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A314KYP40.0A0A314KYP4_NICAT; Homeobox-leucine zipper protein hdg2
STRINGXP_009766038.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2