 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Niben101Scf04218g00013.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
AP2 |
| Protein Properties |
Length: 301aa MW: 34172.5 Da PI: 9.4937 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf04218g00013.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 38.8 | 2.3e-12 | 52 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g
Niben101Scf04218g00013.1 52 SIYRGVTRHRWTGRYEAHLWDkNCWNEtQNKKGRQGAYDDEETAAHAYDLAALKYWG 108
57*******************99999998988888********************98 PP
|
| 2 | AP2 | 41.5 | 3.3e-13 | 140 | 185 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
r+++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g
Niben101Scf04218g00013.1 140 RRHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 185
89999*******99966...3.6*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MAKTSKCNQK NGTTTTTTSS SSSSNKGDGN AIGKAKRTRK SVPRDSPPQR SSIYRGVTRH 60
RWTGRYEAHL WDKNCWNETQ NKKGRQGAYD DEETAAHAYD LAALKYWGQD TILNFPVLTY 120
EKELKEMEGQ SKEEYIGSLR RHHHNGRWEA RIGRVFGNKY LYLGTYATQE EAATAYDMAA 180
IEYRGLNAVT NFDLSRYIKW LRPSNQINPS DNTEPNPNPN ADDIHSMPNT KEKMEFSFLQ 240
HQQQQQSSNS DSTAVALPCP AASATXFVSS NSNSNNNKAR TPMQQMWRCH VQLSALQLHL 300
H
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
