PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04217g02012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 476aa    MW: 54421.2 Da    PI: 6.5507
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04217g02012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.63.7e-3057954129
                       NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               e+++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s k+ l+g++ktLv+ykgrap+g+k+d +mheyrle
  Niben101Scf04217g02012.1   5 EQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS-KHDLIGMRKTLVYYKGRAPNGQKSDFIMHEYRLE 79 
                               5679*************************************.8899****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.151198IPR003441NAC domain
SuperFamilySSF1019412.48E-34698IPR003441NAC domain
PfamPF023652.6E-13878IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MGTEEQSDWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAIYSKHDLI GMRKTLVYYK  60
GRAPNGQKSD FIMHEYRLET DPNGAPQARW VICRVFKKKI AAMRMDTSEH GSPIWYDDQL  120
SFMPDNMDSP KPQYPHSNTI TNYNHRYPNN YPNCKKELDN LHYQIPPHQQ FLQLPLLQTN  180
TKHLAAAPPG ISCSSMPIFG INVNQEHMHP TFGNNINRGC TNDQVEDQVT DWRVLDKFVA  240
SQLSQEDENN YSNARGNDSN SRVKVSDKQE MAPENTSTAS SSSQIDLWNE HGSPIWYDDQ  300
LSFMPDNMDS PKPQYPHSNT IINYNHNYPN NYPNCKKELD NLHYQISPHH QNQQFLQLPL  360
LETNSKLLAA APPGISCSSM PIFGINVNQE HMHPTFGNNL NRGCINDQVE DQVTDWRVLD  420
KFVASQLSQE DENNYSNAAN ARGDNSNLKV KNLDKQELAP ENTSTASSSS QIDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-26610470171NO APICAL MERISTEM PROTEIN
1ut4_B1e-26610470171NO APICAL MERISTEM PROTEIN
1ut7_A1e-26610470171NO APICAL MERISTEM PROTEIN
1ut7_B1e-26610470171NO APICAL MERISTEM PROTEIN
4dul_A1e-26610470171NAC domain-containing protein 19
4dul_B1e-26610470171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234679.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX22e-83NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1J6K9060.0A0A1J6K906_NICAT; Nac domain-containing protein 7
STRINGXP_009602844.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-71NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]