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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Niben101Scf04217g02012.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
NAC |
Protein Properties |
Length: 476aa MW: 54421.2 Da PI: 6.5507 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf04217g02012.1 | genome | BTI | - |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 96.6 | 3.7e-30 | 5 | 79 | 54 | 129 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
e+++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s k+ l+g++ktLv+ykgrap+g+k+d +mheyrle
Niben101Scf04217g02012.1 5 EQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS-KHDLIGMRKTLVYYKGRAPNGQKSDFIMHEYRLE 79
5679*************************************.8899****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 476 aa
Download sequence Send
to blast |
MGTEEQSDWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAIYSKHDLI GMRKTLVYYK 60 GRAPNGQKSD FIMHEYRLET DPNGAPQARW VICRVFKKKI AAMRMDTSEH GSPIWYDDQL 120 SFMPDNMDSP KPQYPHSNTI TNYNHRYPNN YPNCKKELDN LHYQIPPHQQ FLQLPLLQTN 180 TKHLAAAPPG ISCSSMPIFG INVNQEHMHP TFGNNINRGC TNDQVEDQVT DWRVLDKFVA 240 SQLSQEDENN YSNARGNDSN SRVKVSDKQE MAPENTSTAS SSSQIDLWNE HGSPIWYDDQ 300 LSFMPDNMDS PKPQYPHSNT IINYNHNYPN NYPNCKKELD NLHYQISPHH QNQQFLQLPL 360 LETNSKLLAA APPGISCSSM PIFGINVNQE HMHPTFGNNL NRGCINDQVE DQVTDWRVLD 420 KFVASQLSQE DENNYSNAAN ARGDNSNLKV KNLDKQELAP ENTSTASSSS QIDLWK
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-26 | 6 | 104 | 70 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-26 | 6 | 104 | 70 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-26 | 6 | 104 | 70 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-26 | 6 | 104 | 70 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-26 | 6 | 104 | 70 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-26 | 6 | 104 | 70 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |