PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04197g01014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 320aa    MW: 37135.7 Da    PI: 8.9755
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04197g01014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.91.3e-131152344
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                              i+ +  r+ tf kR++g++KK +E  +LC+++ ++i++++++
  Niben101Scf04197g01014.1 11 ISKEKARNATFKKRKEGLMKKLYEFTTLCNVNGCMIMYGPKQ 52
                              888999*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.077151IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-14165IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-16160IPR002100Transcription factor, MADS-box
CDDcd002666.43E-19295No hitNo description
PRINTSPR004041.2E-6323IPR002100Transcription factor, MADS-box
PfamPF003197.7E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRAKLKMEL ISKEKARNAT FKKRKEGLMK KLYEFTTLCN VNGCMIMYGP KQSNGSNSEP  60
EIWTNNSMQS GNSTNKTIQV EEIKNLIDEY KKESSMRSGS TKTFGLSDYF IDRNKKVEEE  120
LIKLRKLNMQ KKYPCWLEFM NQLSEIKLRE FLTLLDDKVE KVKSRIDLLK GNFSSEGLSQ  180
LTHYNDNVNP LLVQGGMEYG GNFMNNNQEQ GAIYPYCNSI INHQEMMMLM MNENDWQYNG  240
ASSSSSNGNN NMRCALMKYE TMMSHNMMLN NQMPYSPYVA PTILQPAPYT MMPSALPQMY  300
HPMKENERDE KLKLSPYLRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019255836.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1J6IR270.0A0A1J6IR27_NICAT; Agamous-like mads-box protein agl80
STRINGXP_009774508.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-19M-type_MADS family protein