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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04173g02003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 439aa MW: 48943.8 Da PI: 9.8332 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Niben101Scf04173g02003.1 98 WKCEKCSKRYAVQSDWKAHSKTC 120 58*****************9998 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 128 | 146 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++++H + Niben101Scf04173g02003.1 128 DCGTIFSRRDSFVTHRAFC 146 8**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-5 | 86 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MTEEVISSGF NSIEGSNPLP LKKKRNLPGN PGKDQNLQLH RRGHNLPWKL KQRTSKEVRK 60 RVYVCPEKSC VHHHASRALG DLTGIKKHYC RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC 120 GTREYRCDCG TIFSRRDSFV THRAFCDALR EETARVTAAS NMHNPLAGNN INYHFIGSPL 180 GPNMAQHFSS LFKPISTNNE NSDPIMRRDQ LSLWNMEQVS QQQETIGNNN LQEIHQIGPL 240 IQTSAAAVYD TNTLLAPRSN PPPVNYNHVN WEQLTNTSSA NVTVPSLFGN LHQSHQQITH 300 SSTASMSATA LLQKAAQIGA TTTTTDPSFL GNNFGMNNRN VKNNNVQVQE VNNNKFCGFY 360 VTTTNNSITT SLGSEVDQGS VNDLSTLNQL QMYNPPSKRR RIHTPEDNVR GGGVGGQTRD 420 FLGVGVQSIC HPSSINGWI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-36 | 94 | 161 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 3e-36 | 94 | 161 | 3 | 70 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 397 | 401 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009587634.1 | 0.0 | PREDICTED: zinc finger protein MAGPIE | ||||
Swissprot | Q9ZWA6 | 1e-122 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | A0A1S4A5Z1 | 0.0 | A0A1S4A5Z1_TOBAC; zinc finger protein MAGPIE-like | ||||
STRING | XP_009587634.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.2 | 1e-117 | C2H2 family protein |
Publications ? help Back to Top | |||
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