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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Niben101Scf04173g02003.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
C2H2 |
| Protein Properties |
Length: 439aa MW: 48943.8 Da PI: 9.8332 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf04173g02003.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.6 | 0.0002 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k++ +s+ k H +t+
Niben101Scf04173g02003.1 98 WKCEKCSKRYAVQSDWKAHSKTC 120
58*****************9998 PP
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| 2 | zf-C2H2 | 10.7 | 0.0017 | 128 | 146 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS
zf-C2H2 5 dCgksFsrksnLkrHirtH 23
dCg+ Fsr++++++H +
Niben101Scf04173g02003.1 128 DCGTIFSRRDSFVTHRAFC 146
8**************8765 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 439 aa
Download sequence Send
to blast |
MTEEVISSGF NSIEGSNPLP LKKKRNLPGN PGKDQNLQLH RRGHNLPWKL KQRTSKEVRK 60
RVYVCPEKSC VHHHASRALG DLTGIKKHYC RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC 120
GTREYRCDCG TIFSRRDSFV THRAFCDALR EETARVTAAS NMHNPLAGNN INYHFIGSPL 180
GPNMAQHFSS LFKPISTNNE NSDPIMRRDQ LSLWNMEQVS QQQETIGNNN LQEIHQIGPL 240
IQTSAAAVYD TNTLLAPRSN PPPVNYNHVN WEQLTNTSSA NVTVPSLFGN LHQSHQQITH 300
SSTASMSATA LLQKAAQIGA TTTTTDPSFL GNNFGMNNRN VKNNNVQVQE VNNNKFCGFY 360
VTTTNNSITT SLGSEVDQGS VNDLSTLNQL QMYNPPSKRR RIHTPEDNVR GGGVGGQTRD 420
FLGVGVQSIC HPSSINGWI
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
