PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 128aa MW: 15099.2 Da PI: 9.5591

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04106g03005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.3	8.6e-14	22	72	1	47
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+e++++++ + + W++Ia +++ gRt++++k++w++y Niben101Scf04106g03005.1 22 RGKFSFEEEEIIIQLHSRKSSLsifcsLWSAIATHLP-GRTDNEIKNYWNTY 72 89****************99***********.**********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.426	1	16	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.5E-10	2	29	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.61E-17	3	81	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.36	17	77	IPR017930	Myb domain
SMART	SM00717	3.0E-10	21	75	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-13	22	72	IPR001005	SANT/Myb domain
CDD	cd00167	1.67E-9	24	73	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.6E-18	30	74	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
LQRCGKSCRL RWTNYLRRDT KRGKFSFEEE EIIIQLHSRK SSLSIFCSLW SAIATHLPGR 60 TDNEIKNYWN TYIRKKLMKM GIDLLDFSYI LNPYNSSQSQ YFKIDGIATY EYTVKPSEPV 120 GQNNVQES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	9e-16	3	77	37	105	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	2e-15	3	77	60	128	MYB TRANSFORMING PROTEIN
1mse_C	9e-16	3	77	37	105	C-Myb DNA-Binding Domain
1msf_C	9e-16	3	77	37	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:19517001, ECO:0000305\|PubMed:12857823}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:12857823, ECO:0000269\|PubMed:19517001, ECO:0000269\|PubMed:8980549}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783632.1	4e-52	PREDICTED: transcription factor MYB39-like
Swissprot	Q9LDR8	8e-39	MY102_ARATH; Transcription factor MYB102
TrEMBL	A0A1U7WUP3	9e-51	A0A1U7WUP3_NICSY; transcription factor MYB39-like
STRING	XP_009783632.1	1e-51	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	4e-41	MYB-like 102

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615] Zhu L,Guo J,Ma Z,Wang J,Zhou C Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis. Biomolecules, 2019. [PMID:29880735]