PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04082g03013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 286aa MW: 32388.4 Da PI: 7.8078

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04082g03013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	36.1	1.4e-11	21	46	1	26
G2-like 1 kprlrWtpeLHerFveaveqLGGsek 26 kprl+Wt++LH+rF eav+qLGG+ek Niben101Scf04082g03013.1 21 KPRLKWTSDLHQRFTEAVAQLGGPEK 46 79**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-9	19	49	IPR009057	Homeodomain-like
Pfam	PF14379	1.1E-21	72	118	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MALQNAQQSK DMNLVLSSDA KPRLKWTSDL HQRFTEAVAQ LGGPEKFREP QSDKLSLDNR 60 DGAQNQMNES LQIARALQMQ MEVQRKLHQQ IEVQRHLQLR IEAQGKYLQS VLKKAQETLA 120 GYGTSSVGVE FAKAELSQLV SMINNGCCPT SPLSAITEID GLISKDTERR QLNGEILYSL 180 ESSLTSSESS GRKEDQNNRQ NTNTSIALSL NPQTKEKKRR RNNICDDICV EQPSSKRCQS 240 QRTGENLAKI EFLETIDLNN KCPNEYEHGP KVIDLNNKEV KQFQWL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019232056.1	1e-167	PREDICTED: myb family transcription factor PHL8-like isoform X2
Swissprot	F4I274	7e-54	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A1S4BWS8	1e-165	A0A1S4BWS8_TOBAC; uncharacterized protein LOC107812672
TrEMBL	A0A1U7WQZ3	1e-165	A0A1U7WQZ3_NICSY; uncharacterized protein LOC104226747
STRING	XP_009777109.1	1e-166	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6036	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	2e-54	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]