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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04007g05007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 27333.5 Da PI: 9.3389 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.4 | 1.3e-08 | 151 | 191 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Niben101Scf04007g05007.1 151 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYMKFL 191 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.894 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-13 | 147 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.1E-14 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-14 | 148 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-6 | 152 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.67E-6 | 165 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDIDLLKSAA PEDQMEMMLL MQMQDFSKGF SDKNEMPTLD CSPQGSVNIS NNTNANLSQM 60 IDYHNSHTIL NVPASTISFT GSPSVIQHQE TLRNTCGAYA SHTVKRNSMA AMREMIFKIA 120 AMQPIQIDPE SVKPPKRKNV KISNDPQSVA ARHRRERISE RIRILQRLVP GGTKMDTASM 180 LDEAIHYMKF LKKQVQSLEK LEVSRPVAAA VSGCLGFPVP MSSLSGNYLP MGSKTYYPYH 240 QSVQP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009766851.1 | 1e-152 | PREDICTED: transcription factor HEC2-like | ||||
Refseq | XP_016456456.1 | 1e-152 | PREDICTED: transcription factor HEC2-like | ||||
TrEMBL | A0A1S3YVV6 | 1e-151 | A0A1S3YVV6_TOBAC; transcription factor HEC2-like | ||||
TrEMBL | A0A1U7VPH1 | 1e-151 | A0A1U7VPH1_NICSY; transcription factor HEC2-like | ||||
STRING | XP_009766851.1 | 1e-151 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA752 | 23 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50330.1 | 6e-41 | bHLH family protein |