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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04000g01030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 923aa MW: 104954 Da PI: 5.2167 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 236.8 | 9.7e-73 | 452 | 758 | 34 | 347 |
GRAS 34 dgdpmqRlaayfteALaarlarsvselykal.ppsetsekn.....sseelaalklfsevsPilkfshltaNqaIleavegeerv 112 +++p+qRl +y+++AL++r+ r ++ y + ++ + s + +a+ + +++ P+ ++ +++ q+Ile v +++++ Niben101Scf04000g01030.1 452 SRNPVQRLSFYIAKALEERIDR-ATGRYTCTdEDRHL---KyiksmASGTNSAFLICHQLLPFSQVMQFAGVQTILENVRSAKKI 532 569*******************.33333222122222...122333455556666799*************************** PP GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 H iDf+i G+QW ++qaLa+++ + l+iT+vgs ++ke+ e tg+ L++fA++lg++f+f+++v ++++d++ e+ +++ Niben101Scf04000g01030.1 533 HLIDFNIRSGIQWTVMMQALAEKS-EIELLKITAVGS---TEKEKFEVTGNTLHSFATSLGLSFSFDIVVLSDMKDFKKESVNIE 613 **********************95.569*********...579****************************************** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +E+laV + l ++ ++ le+ ++k+v+s+ P+v+v+ e ea+hns+sFl+rf+e+l +y +fd++e + r+s r Niben101Scf04000g01030.1 614 ADETLAVYCNTVLRTMIPKPDYLEN----LMKVVRSIGPTVIVIGEVEANHNSPSFLNRFIETLFFYGGFFDCFEDCMDRDSPCR 694 ****************977777777....******************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 +++E ++g+ i+n+va+eg+er+ r+ +le Wr+ ++++G+ + ++se+a qa+l+l++++ + Niben101Scf04000g01030.1 695 RTIEGLYFGEGIRNIVAAEGKERFTRNVKLEVWRAFFSRFGMVEEEFSESAWYQANLILKQFA-Q 758 ************************************************************998.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.64 | 381 | 766 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.4E-70 | 452 | 758 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 923 aa Download sequence Send to blast |
MGSSSEKWQG KKSLVSLMDC AANLLREPFQ FFTTILLSLL FPLSFLILSR LSIAHYLIDL 60 LGYSTEETDS DLLIKFFLHA NPTFLHILVS LVSVAALTHS LMGGTSCFIR RTAEPVSRPR 120 LYTAWIFLCI LQICVGLGIE DGHDLGDKRG FLARAIFFLG LHETMFFWSK TVVKPVVDDT 180 VFGVARENRL AEKAALAMSF GGLWWWRLRG EVESLVVVVE KKRDLLINIG LVDFVGWWLY 240 YLTVTIGLIK VVKSLIWVVY VMFGRRVVDT DNARDSVRND EKQICPGIGT MANVSNDNFT 300 GDHFRNELVV EDPWFEVELE DCADIDSVYS MCNEENTSNE QVTTNLFQDQ QQSISNWMQS 360 RFSTNTHQIQ SSIEQPKNDD FQPQVLQLIG NSTNEKSIPF SLASFELLNN YGRLIKKSSE 420 ENLSINNALS CETRASEEVN NQQFHLARKL TSRNPVQRLS FYIAKALEER IDRATGRYTC 480 TDEDRHLKYI KSMASGTNSA FLICHQLLPF SQVMQFAGVQ TILENVRSAK KIHLIDFNIR 540 SGIQWTVMMQ ALAEKSEIEL LKITAVGSTE KEKFEVTGNT LHSFATSLGL SFSFDIVVLS 600 DMKDFKKESV NIEADETLAV YCNTVLRTMI PKPDYLENLM KVVRSIGPTV IVIGEVEANH 660 NSPSFLNRFI ETLFFYGGFF DCFEDCMDRD SPCRRTIEGL YFGEGIRNIV AAEGKERFTR 720 NVKLEVWRAF FSRFGMVEEE FSESAWYQAN LILKQFAQGI MEDSADIQNF YTNYGFYQEY 780 AVNPQVQEMN KQQEEMNVYA VTPHVQTGSH VDKTPFLSLA PFELLRNNPS RCKNTEGDKV 840 RDMDNTTNAY QKLSAMQIMR LAGERFIQFS SNKSININNL LHPYGSALSN LSQEDNQDVE 900 LAQILLAAAE KVLTNNMTAQ GKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-36 | 425 | 753 | 5 | 340 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019263178.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A3Q7EHN3 | 0.0 | A0A3Q7EHN3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g079370.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 4e-37 | RGA-like 1 |