PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03987g00013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 553aa    MW: 62558.4 Da    PI: 6.5155
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03987g00013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.63.2e-2910022110129
                       NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdke 91 
                                deel+ +yL kk+ +++++   +i+evd++ ++P++L  +++ ++ k+wyf s++++ky++g +++   + ++gyW+  g+d  
  Niben101Scf03987g00013.1 100 ADEELIIHYLDKKMMDQPFPN-YTIHEVDVFLYHPQQLSqMHHPSQAKKWYFLSPASNKYTEGGQSKSvsVNDDGYWEPCGTDSL 183
                               59****************999.67**************8446666888*************9888887434669*********** PP

                       NAM  92 vlskkgelvglkktLvfykg.rapkgektdWvmheyrle 129
                               +++ +g+l+g +ktL + +g ++++ ++t+W+mheyrle
  Niben101Scf03987g00013.1 184 IHK-DGKLIGYRKTLNYIEGkHDKDMKRTEWLMHEYRLE 221
                               999.99************9945566789*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.57691236IPR003441NAC domain
PfamPF023654.3E-15100220IPR003441NAC domain
SuperFamilySSF1019411.7E-33101235IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MKKQNIAMEI EEFFEMTVTI IKEMGSLFQC QRTNFVLVEV KMVESLQRNT NFNSNKSWQL  60
FPGKGKQDST ANVTNVNRNC ADVGVIPKQE VLVDDQLSGA DEELIIHYLD KKMMDQPFPN  120
YTIHEVDVFL YHPQQLSQMH HPSQAKKWYF LSPASNKYTE GGQSKSVSVN DDGYWEPCGT  180
DSLIHKDGKL IGYRKTLNYI EGKHDKDMKR TEWLMHEYRL EGSRGMQRVI CKLFKLNNKL  240
MEAEEKEATK FAAPNDGASN ADPTIQGPKK ANDVTNDKEP SNGHSRDLLP MPDTDQGTTM  300
PTPMPQHVQG TTVTRTGRQK ATNNVVRNKR PRRKRDSHPP PASHQGLMMP HLPNENSQPQ  360
RDQRIRLPPF PQNDERKMFP ISTGPYKANN GVVLTDNGPS NSLVVPFCPK YILDEPSFDW  420
TVANSWLQDG TMLPSRPQHG QHTILPPLTG NNANADEVSV MGLTLNHLRD AQDLPFSVEL  480
PKLPSVQASP HGSHENEAAV APRYDGWPIY TAETRLPPFD GPFESLTEDE LAFFDNPDPG  540
YPEAFENKKE AKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-1810123530167NAC domain-containing protein 19
3swm_B1e-1810123530167NAC domain-containing protein 19
3swm_C1e-1810123530167NAC domain-containing protein 19
3swm_D1e-1810123530167NAC domain-containing protein 19
3swp_A1e-1810123530167NAC domain-containing protein 19
3swp_B1e-1810123530167NAC domain-containing protein 19
3swp_C1e-1810123530167NAC domain-containing protein 19
3swp_D1e-1810123530167NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329333RPRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772246.10.0PREDICTED: uncharacterized protein LOC104222681 isoform X1
RefseqXP_009772247.10.0PREDICTED: uncharacterized protein LOC104222681 isoform X1
RefseqXP_016500362.10.0PREDICTED: uncharacterized protein LOC107818826 isoform X1
RefseqXP_016500364.10.0PREDICTED: uncharacterized protein LOC107818826 isoform X1
TrEMBLA0A1S4CGQ40.0A0A1S4CGQ4_TOBAC; uncharacterized protein LOC107818826 isoform X1
TrEMBLA0A1U7W4W40.0A0A1U7W4W4_NICSY; uncharacterized protein LOC104222681 isoform X1
STRINGXP_009772246.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1503569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-23NAC-like, activated by AP3/PI