PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf03969g06008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 312aa MW: 35798.3 Da PI: 8.2009

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03969g06008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.4	1.6e-17	10	102	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 Wt qe+++Liea++ ++er +r++ + +W++v +++++ + rs++qC++kw+nl +++kk++e e+++++++ ++ Niben101Scf03969g06008.1 10 WTVQETMVLIEAKKMDDERRNRRQgdinergkPTELRWKWVEDYCWRNSCLRSQNQCNDKWDNLMRDFKKVREYERREAEKAAEE 94 ************999999975333334433999*****************************************9999999 PP trihelix 79 cpyfdqle 86 ++ + ++e Niben101Scf03969g06008.1 95 IRSYWKIE 102 99999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.097	2	74	IPR017877	Myb-like domain
Pfam	PF13837	5.7E-11	9	88	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MLRDYRKGNW TVQETMVLIE AKKMDDERRN RRQGDINERG KPTELRWKWV EDYCWRNSCL 60 RSQNQCNDKW DNLMRDFKKV REYERREAEK AAEEIRSYWK IEKNERKEKS LPTNMLPEIY 120 EALVEVVDRK SQKMLPASLP PTLQQQSTQP QITPLPLPPL PLPPPTTVVA QTAAHHQLSD 180 GAYTSQYPFP TMCDSSDPDT SDQRSDSPAK KRRMSGEGTI SGTAKGNINN SSQEVGSAIS 240 KSAAIIAEAI HSCEEREERR HRELLTLHER RLQIEESKAE INREGINGLV DSINKLANFI 300 LALAGNKNQS AP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777500.1	0.0	PREDICTED: uncharacterized protein LOC104227066
Refseq	XP_016433408.1	0.0	PREDICTED: uncharacterized protein LOC107759919
TrEMBL	A0A1S3X142	0.0	A0A1S3X142_TOBAC; uncharacterized protein LOC107759919
TrEMBL	A0A1U7WTE5	0.0	A0A1U7WTE5_NICSY; uncharacterized protein LOC104227066
STRING	XP_009777500.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4821	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-50	Trihelix family protein