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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Niben101Scf03949g02007.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
NAC |
Protein Properties |
Length: 340aa MW: 38817.1 Da PI: 8.0468 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf03949g02007.1 | genome | BTI | - |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 172.7 | 1.1e-53 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgy 82
+ppGfrFhPtdeel+++yLkkk++ +k+++ evi+evd++k+ePwdL++k+k ++ewyfFs++d+ky+tg+r+nrat++g+
Niben101Scf03949g02007.1 8 VPPGFRFHPTDEELLHYYLKKKISFQKFDM-EVIREVDLNKIEPWDLQEKCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGF 91
69****************************.99**************964444222455************************** PP
NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
Niben101Scf03949g02007.1 92 WKATGRDKCIRN-SFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137
***********9.8899****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MATSSGGVPP GFRFHPTDEE LLHYYLKKKI SFQKFDMEVI REVDLNKIEP WDLQEKCKIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSFKKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDAD DPQGNQSDDG WVICRVFKKK HLFKVGNEGS GAASSDQLNS 180 TSSHQSRAFN TQYLLQQQQQ QGGHGLNYSH IPLALPQYNS HLQLQPQNFI PNKPLGYHDF 240 SALPTSDHQA PLMVKQLMSS ADSGYSEQNL PYQQEVGSSC DHQNLNEWKM IASSHGQLGQ 300 EDDDSAKNAG VRFDDANASS MSQINQLSHR GEMDFWGYTK
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-53 | 8 | 160 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 8 | 160 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 8 | 160 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 8 | 160 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-53 | 8 | 160 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 8 | 160 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |