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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03944g02008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 208aa MW: 24057.8 Da PI: 4.8429 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 159.7 | 2.5e-49 | 2 | 206 | 167 | 374 |
GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 +fA++l+++f+fn+++++++ +l+ e ++++ +E++a+ +++ l+r+l+++ +le +++++k ++P+ ++vve ea+hns+ Niben101Scf03944g02008.1 2 SFAKSLNLSFSFNIVLVENIMELKQEYFEIDDEEVVAIFVQYFLMRMLARPDKLEA----LMRVIKVINPRAMIVVEVEANHNSP 82 69**********************************************88888888....************************* PP GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336 F++rf+e+l +y a+fd+le + ++++ r+ E e l++ i+ +va+eg+er+ rh + Wr+ + + G+++v+ls++ q Niben101Scf03944g02008.1 83 VFVDRFVETLLFYGAFFDALEDCMKHDEKSRTATESEHLNQGIRIIVAAEGEERTIRHVKIDVWRMFFARYGMEEVELSKSSLYQ 167 ************************************************************************************* PP GRAS 337 aklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 a+l+l+++ + + e ++++l++gWk+ pL s+SaW+ Niben101Scf03944g02008.1 168 ANLVLKNFVcGSCSTQEMNQNCLLIGWKGTPLNSLSAWT 206 *********8887888899*******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.982 | 1 | 185 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.6E-47 | 2 | 206 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MSFAKSLNLS FSFNIVLVEN IMELKQEYFE IDDEEVVAIF VQYFLMRMLA RPDKLEALMR 60 VIKVINPRAM IVVEVEANHN SPVFVDRFVE TLLFYGAFFD ALEDCMKHDE KSRTATESEH 120 LNQGIRIIVA AEGEERTIRH VKIDVWRMFF ARYGMEEVEL SKSSLYQANL VLKNFVCGSC 180 STQEMNQNCL LIGWKGTPLN SLSAWTFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-20 | 3 | 205 | 170 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800222.1 | 1e-137 | PREDICTED: DELLA protein RGL1-like | ||||
Refseq | XP_016458635.1 | 1e-137 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1S3Z2I1 | 1e-136 | A0A1S3Z2I1_TOBAC; DELLA protein RGL1-like | ||||
TrEMBL | A0A1U7Y7W4 | 1e-136 | A0A1U7Y7W4_NICSY; DELLA protein RGL1-like | ||||
STRING | XP_009800222.1 | 1e-137 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA19048 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 5e-40 | RGA-like 2 |