PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03932g05003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 425aa    MW: 46582.1 Da    PI: 6.4593
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03932g05003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.52.8e-39592082135
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssaseceaesssssasns 85 
                                g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl+ a p+i el+ + ++++a++ ++e++ss++ ++
  Niben101Scf03932g05003.1  59 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKAVEWLLKVAAPSIAELPPLeGFPDAQQLSDEKRSSTGIEP 143
                               689*************************************************************845555333333333333322 PP

                       TCP  86 ssg..............kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                               + +              ++++ ++ s +s++s+ s l+l++ esr kar ra+er++ek + k++
  Niben101Scf03932g05003.1 144 GFDsadvemdddepnyhQQQQLQPYSGNSETSKGSGLSLSRsESRIKARDRAKERSAEKEKEKEN 208
                               222344555555555546777777889999999999****99*****************999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3860205IPR005333Transcription factor, TCP
PROSITE profilePS5136930.70261119IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.162185204IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEIEEIQAQE CKFPRISNKI GYQDEELDDV GEVKKSSFGD IGKLYGWPSS RIVRVSRASG  60
GKDRHSKVWT SKGLRDRRVR LSVNTAIQFY DLQDRLGCDQ PSKAVEWLLK VAAPSIAELP  120
PLEGFPDAQQ LSDEKRSSTG IEPGFDSADV EMDDDEPNYH QQQQLQPYSG NSETSKGSGL  180
SLSRSESRIK ARDRAKERSA EKEKEKENES SIAAHHHQNM HHSSSFTELL AGSMSNNNNN  240
NNSNTNPIHQ TTLRQWSTNP LEYFTSGLLG PSSTRAIDNS TGLSGQVYMG NPLQPLIAVS  300
SPMFSISGDH QPELQHFPFG GNNLVPVVTP NGGSNSHSNT SNEYKLNFSI SRGTLQSNSS  360
STSPSILPHH FHRFSPVDGS QSLFLGATMA TAAAPNAAAL YDAPLQLFYG SGFNDHSDQK  420
GKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2266120155Putative transcription factor PCF6
5zkt_B8e-2266120155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478382.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A1S4ANR40.0A0A1S4ANR4_TOBAC; transcription factor TCP2-like
STRINGXP_009591865.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.22e-36TCP family protein