PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03906g04004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 502aa MW: 55488.2 Da PI: 6.2925 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.7 | 3.2e-30 | 235 | 294 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ Niben101Scf03906g04004.1 235 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAsGCPVRKQVQRCLEDMSILITTYEGTHNHP 294 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-32 | 220 | 296 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-27 | 228 | 296 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.264 | 230 | 296 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-36 | 235 | 295 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-27 | 236 | 294 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MENNKSESDE MEIDLSLKLD SREEEIEPLN EENQSSELVN AKTLGKDQEL SKAETSGSSK 60 TEELSLLQTE MNKMKEENKF LRKAVEQTMK DYYDLQAKFA IIHQNNHEKD HRNFLSLSGN 120 DDTTEELTRG PKILDIKNRT PSQTSQEFDD IMDGDQLGLS LTLVSSNSSI TTSKLVESTE 180 EERKEKIKED NAAITSQIQN KGNLQGGLTN HVTTASPPNR KARVSVRARC ESATMNDGCQ 240 WRKYGQKIAK GNPCPRAYYR CTVASGCPVR KQVQRCLEDM SILITTYEGT HNHPLPVGAT 300 AMASTTSAAA SFMLVNSSIN PLLNQAVNFP KYHNNSPNYS DHIPNSSSSS SPYFSNLRNN 360 ILNSSDPNIV LDLTKNISND HHHQFHFVSS SSNSSATTTT NQLSQYSWVP KLPSNNYDVN 420 NNTIVNNLFT SPKLQGDHHH HHQNSSSNPS LAENMSVIAS DPKFRVAVAA AISSLINKDQ 480 SHPISTSSLG DHGESNGGSI VC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-21 | 222 | 298 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019265826.1 | 0.0 | PREDICTED: probable WRKY transcription factor 9 | ||||
Swissprot | Q9C9F0 | 7e-75 | WRKY9_ARATH; Probable WRKY transcription factor 9 | ||||
TrEMBL | A0A314L2M8 | 0.0 | A0A314L2M8_NICAT; Putative wrky transcription factor 9 | ||||
STRING | XP_009800949.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7287 | 21 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 7e-70 | WRKY DNA-binding protein 9 |