PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf03894g03006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 208aa MW: 24141.3 Da PI: 5.2393

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03894g03006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.9	2.3e-20	39	92	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R++f++eq++ Le +Fe + p +++++LAk+lgL+ rqV +WFqN+Ra+ k Niben101Scf03894g03006.1 39 MRRRFNDEQIRSLEHMFETEARPELRTKQQLAKSLGLQPRQVAIWFQNKRARSK 92 699*************************************************99 PP
2	HD-ZIP_I/II	99.9	2.4e-32	40	120	3	83
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +rr+++eq+++LE++Fe+e + e + K++la++Lglqprqva+WFqn+RAR k+kqlE++y++Lk +yd+l ++ ++L+++ Niben101Scf03894g03006.1 40 RRRFNDEQIRSLEHMFETEARPELRTKQQLAKSLGLQPRQVAIWFQNKRARSKSKQLEMEYRMLKISYDNLGSKLKKLTEK 120 79************************************************************************9999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.3E-18	24	96	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.556	34	94	IPR001356	Homeobox domain
SMART	SM00389	1.9E-17	36	98	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-18	39	101	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-17	39	92	IPR001356	Homeobox domain
CDD	cd00086	1.72E-15	40	95	No hit	No description
PRINTS	PR00031	5.6E-6	65	74	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	69	92	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.6E-6	74	90	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MSVGERLPTN SNMWSQSSLL GKDLNLHSMS SIKNCKDNMR RRFNDEQIRS LEHMFETEAR 60 PELRTKQQLA KSLGLQPRQV AIWFQNKRAR SKSKQLEMEY RMLKISYDNL GSKLKKLTEK 120 GGNEEIQNEG NKLETEVIKS EFIQETCSPE FGLPFCEDSR EIEYLGPESD ILNMAQIADG 180 LSEIENKCNF ESRTFLDDSA CRSPLWEF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009796883.1	1e-143	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A1U7Y176	1e-141	A0A1U7Y176_NICSY; homeobox-leucine zipper protein ATHB-12-like
STRING	XP_009796883.1	1e-142	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10273	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	4e-31	homeobox 7