![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf03894g03006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 208aa MW: 24141.3 Da PI: 5.2393 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.3e-20 | 39 | 92 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R++f++eq++ Le +Fe + p +++++LAk+lgL+ rqV +WFqN+Ra+ k Niben101Scf03894g03006.1 39 MRRRFNDEQIRSLEHMFETEARPELRTKQQLAKSLGLQPRQVAIWFQNKRARSK 92 699*************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 99.9 | 2.4e-32 | 40 | 120 | 3 | 83 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +rr+++eq+++LE++Fe+e + e + K++la++Lglqprqva+WFqn+RAR k+kqlE++y++Lk +yd+l ++ ++L+++ Niben101Scf03894g03006.1 40 RRRFNDEQIRSLEHMFETEARPELRTKQQLAKSLGLQPRQVAIWFQNKRARSKSKQLEMEYRMLKISYDNLGSKLKKLTEK 120 79************************************************************************9999875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.3E-18 | 24 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.556 | 34 | 94 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-17 | 36 | 98 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 39 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-17 | 39 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.72E-15 | 40 | 95 | No hit | No description |
PRINTS | PR00031 | 5.6E-6 | 65 | 74 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 69 | 92 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.6E-6 | 74 | 90 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MSVGERLPTN SNMWSQSSLL GKDLNLHSMS SIKNCKDNMR RRFNDEQIRS LEHMFETEAR 60 PELRTKQQLA KSLGLQPRQV AIWFQNKRAR SKSKQLEMEY RMLKISYDNL GSKLKKLTEK 120 GGNEEIQNEG NKLETEVIKS EFIQETCSPE FGLPFCEDSR EIEYLGPESD ILNMAQIADG 180 LSEIENKCNF ESRTFLDDSA CRSPLWEF |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009796883.1 | 1e-143 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A1U7Y176 | 1e-141 | A0A1U7Y176_NICSY; homeobox-leucine zipper protein ATHB-12-like | ||||
STRING | XP_009796883.1 | 1e-142 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10273 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.2 | 4e-31 | homeobox 7 |