PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03882g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 263aa    MW: 30201.9 Da    PI: 6.8026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03882g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08150190954
                               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                r RR++i +++  L++l+P       +K++ a++L +A++Y+k L
  Niben101Scf03882g01003.1 150 ARLRREKISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 190
                               699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-15146208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13147205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.83E-11147195No hitNo description
PfamPF000109.2E-6151190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDINHHLKLR TSTWQPTMAN VDDNIFDNHH HHQQQQRQFP FDHNPIWPSF PLQTPYHHLP  60
SFSSESQQQQ RQQQVPFDHV GNNHVQTLIE DHHDQEPEDD ENVEEEELGA MKEMMFKIAA  120
MQPVDIDPAT IRKPKRRNVR ISNDPQSVAA RLRREKISEK IRILQRLVPG GTKMDTASML  180
DEAIRYVKFL KRQIRQLQSS NHHLPPSQVL VVPCPSTENW ANMITPTKAL ILGSSDTSTT  240
SIATTTTFVG NSASTPMYEV IGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783821.11e-149PREDICTED: transcription factor HEC3-like
RefseqXP_016456067.11e-149PREDICTED: transcription factor HEC3-like
TrEMBLA0A1S3YVT81e-148A0A1S3YVT8_TOBAC; transcription factor HEC3-like
TrEMBLA0A1U7X2C51e-148A0A1U7X2C5_NICSY; transcription factor HEC3-like
STRINGXP_009783821.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.14e-45bHLH family protein