PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03867g02006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 224aa    MW: 24587.4 Da    PI: 10.8851
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03867g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000891840123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C +C k Fs+   L  H+ +H
  Niben101Scf03867g02006.1 18 YRCDNCRKLFSSCQALAGHQHLH 40
                              9*******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.86E-51743No hitNo description
PROSITE profilePS5015710.2841845IPR007087Zinc finger, C2H2
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MANELNNNTP SQGPIVVYRC DNCRKLFSSC QALAGHQHLH KVQGTWVKGH HHKFLLPPHY  60
LPDLSRFIAR NNKSITVRNG GRGKPQTVFE PQPMVQEPLA VAPALATSLL AQALVPAPVG  120
PRRAPIIRPR GRPRSIIRSQ PMVQVPLAVS PAPATPLLVQ DPDPIAHLEN QLALFQSRLN  180
YFKGVGDRRG ESTHSSTGST SITIAAEKTN GKKKVEELDL ELRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019239377.16e-91PREDICTED: predicted GPI-anchored protein 58
TrEMBLA0A1J6J8R91e-89A0A1J6J8R9_NICAT; Uncharacterized protein
STRINGXP_009619950.17e-47(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6643821