PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03863g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 396aa    MW: 44966.5 Da    PI: 7.9084
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03863g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.3e-32224278155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               k+r+rWt++LH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR 
  Niben101Scf03863g01004.1 224 KTRIRWTQDLHDRFVECVNRLGGADKATPKAILKLMESDGLTIFHVKSHLQKYRN 278
                               68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.35E-17223278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-28223279IPR009057Homeodomain-like
PROSITE profilePS5129410.032223281IPR017930Myb domain
TIGRFAMsTIGR015572.3E-24224279IPR006447Myb domain, plants
PfamPF002491.9E-8228277IPR001005SANT/Myb domain
PfamPF143792.2E-21308355IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSIQRIGTQE RVPKNSAYPS DYTLEFARMP VQALHAQKQF SSYVGFSLPP ATPAEDVCQQ  60
QQQFIPNANP SSNSTIIGHI GSPSSAFFAT ERYLGLTQYD DQSKNFDFKI PSYGFLPDSP  120
AEDFHPKISL APFIRSQFSS SQPFSPDHQV PYRSHFSSLT EKERILHLKR KLLGEFDTPF  180
DGNQDFSLPH NLCGSHLEYM KQQSGFPSAN SNNSACSGGS VCNKTRIRWT QDLHDRFVEC  240
VNRLGGADKA TPKAILKLME SDGLTIFHVK SHLQKYRNAK YIPEPTDGKT EKRNCPNNVS  300
QIDSKTGMQI KEALQMQLEV QRRLHEQLEI QRKLQLRIEE QGKQLKMIFD QQQRTTRSLL  360
DTQNSSISAP EHDPSTMYDD MEVLVADNIR FPSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-22224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-22224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-22224281158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-22224281158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-22224281158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-22224281158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-22224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-22224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-22224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-22224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-22224281259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-22224281259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247775.10.0PREDICTED: myb family transcription factor PHL5-like
TrEMBLA0A1J6J5C80.0A0A1J6J5C8_NICAT; Myb family transcription factor phl5
STRINGXP_009801945.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-72G2-like family protein