PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03817g12030.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 520aa    MW: 58109.6 Da    PI: 9.9701
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03817g12030.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2262.3e-0875119149
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49 
                               +++ GV+ +k  g++ A I+dp     + k+++lg+f ta+eA  a+ a 
  Niben101Scf03817g12030.1  75 TKFAGVHKRK-CGKYGAAIKDPI----KkKKVWLGSFKTAQEASIAYLAK 119
                               6899***999.7*********72....35*****************9875 PP
2AP234.45.5e-11217261452
                       AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                               +G+r+ kk+g++ A I+dp    +r k+++lg+f+t eeA +a+  ++ +
  Niben101Scf03817g12030.1 217 HGIRR-KKNGKYGAVIKDP----IRlKQIWLGTFDTVEEASEAYFSYKSE 261
                               69995.559*********8....369******************988766 PP
3AP234.45.5e-11308352250
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaar 50 
                               ++ GV+ +k +g++ +eI  p     + kr++lg+f taeeA + +   +
  Niben101Scf03817g12030.1 308 HIIGVHKNK-WGKYTSEITNPI----TkKRIWLGTFHTAEEASRVYQSKK 352
                               789***999.*******99972....36***************9986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.96E-1275116No hitNo description
SMARTSM003809.5E-676130IPR001471AP2/ERF domain
PROSITE profilePS5103212.43176135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-1276118IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1076122IPR016177DNA-binding domain
SMARTSM003803.9E-4215263IPR001471AP2/ERF domain
PROSITE profilePS5103212.681215275IPR001471AP2/ERF domain
PfamPF008471.5E-4217263IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-9217259IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-10217255IPR001471AP2/ERF domain
CDDcd000182.72E-11218255No hitNo description
PROSITE profilePS5103214.276308370IPR001471AP2/ERF domain
PfamPF008477.5E-5308348IPR001471AP2/ERF domain
SMARTSM003803.3E-6308362IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-12309356IPR016177DNA-binding domain
PRINTSPR003675.8E-5309320IPR001471AP2/ERF domain
CDDcd000184.01E-13311348No hitNo description
Gene3DG3DSA:3.30.730.101.4E-13311355IPR001471AP2/ERF domain
PRINTSPR003675.8E-5331347IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
METVAKRKET EEKTSNKKQN KISQVVILDS DAAVSSASEI QETRRRSAEI LDYKVKEQNH  60
DHMDSNSTVM DLHATKFAGV HKRKCGKYGA AIKDPIKKKK VWLGSFKTAQ EASIAYLAKQ  120
SEFAAQQEPV KANKDSSKIK SSASATAQLM QKIPSSLLKP QGSNSTNTTS ANGKNPFIKE  180
IRKDPFQEKQ GTRRSSFDGC NSNTVTTSNT KAKISLHGIR RKKNGKYGAV IKDPIRLKQI  240
WLGTFDTVEE ASEAYFSYKS EFDKLCQLGN KENKPKDCGQ IQHESPVGAS SSLDTASVGR  300
KKRHKTTHII GVHKNKWGKY TSEITNPITK KRIWLGTFHT AEEASRVYQS KKLEFQKLVN  360
VKEPHSTNKQ THSKQHGKKK LVKGKQARVN CEAFQGGQRI DSCEQSHSMS MTRNLLGISL  420
DTAEEAFHSY HPFKEFDFQC STKSELQSNV LTDSSGGEKK KGQVDEDLWM GQWVQLTGGS  480
EVKFSLKLGL PIIDNYGSLL GEFSCLDDLS ICYTDDECFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18199KRKCGKYGAAIKDPIKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238055.10.0PREDICTED: uncharacterized protein LOC109218168
TrEMBLA0A1J6KGR30.0A0A1J6KGR3_NICAT; Ethylene-responsive transcription factor erf118
STRINGXP_009766452.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-14ERF family protein