PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03810g07006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 327aa    MW: 37787.4 Da    PI: 9.0045
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03810g07006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.29.3e-51331662128
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                                pGfrFhPtdeelv++yL++kve+k++++ +vikevdiyk++PwdLp ++v  + kewyfFs r +ky+++ r+nr+t sg+Wka
  Niben101Scf03810g07006.1  33 LPGFRFHPTDEELVSFYLRRKVENKRIKM-DVIKEVDIYKHDPWDLPrNTVGDNCKEWYFFSMRGRKYRNSVRPNRVTGSGFWKA 116
                               59***************************.9****************667777788***************************** PP

                       NAM  86 tgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg dk+v+s+       ++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Niben101Scf03810g07006.1 117 TGIDKPVYSTtttsqstDRECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 166
                               *********977665555555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.32932199IPR003441NAC domain
SuperFamilySSF1019412.09E-5332198IPR003441NAC domain
PfamPF023651.8E-2534166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MKMSEKGENM ELVENIATAT NIKAEDEEEI MQLPGFRFHP TDEELVSFYL RRKVENKRIK  60
MDVIKEVDIY KHDPWDLPRN TVGDNCKEWY FFSMRGRKYR NSVRPNRVTG SGFWKATGID  120
KPVYSTTTTS QSTDRECIGL KKSLVYYRGS AGKGTKTDWM MHEFRLPPNS KTSNQQLLNP  180
KSIIIPEAEV WTLCRIFKRT SNYKRFTPDW KQPIIKQSLG DASSKACSLQ SETGDNHSIN  240
INFKKMEFQQ KNNNTATGGN YQADQRTTDY NNSQPIITMP QSSITSSNSS FWNTSAEEQY  300
FFSDGNWDEL KSVVDLAIDP RSLFGFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-472720510174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760719.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2
SwissprotQ9SK554e-89NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1U7VEG40.0A0A1U7VEG4_NICSY; transcription factor JUNGBRUNNEN 1-like isoform X2
STRINGXP_009760718.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-87NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]