PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03810g07006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 37787.4 Da PI: 9.0045 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.2 | 9.3e-51 | 33 | 166 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 pGfrFhPtdeelv++yL++kve+k++++ +vikevdiyk++PwdLp ++v + kewyfFs r +ky+++ r+nr+t sg+Wka Niben101Scf03810g07006.1 33 LPGFRFHPTDEELVSFYLRRKVENKRIKM-DVIKEVDIYKHDPWDLPrNTVGDNCKEWYFFSMRGRKYRNSVRPNRVTGSGFWKA 116 59***************************.9****************667777788***************************** PP NAM 86 tgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg dk+v+s+ ++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl Niben101Scf03810g07006.1 117 TGIDKPVYSTtttsqstDRECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 166 *********977665555555***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.329 | 32 | 199 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-53 | 32 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-25 | 34 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MKMSEKGENM ELVENIATAT NIKAEDEEEI MQLPGFRFHP TDEELVSFYL RRKVENKRIK 60 MDVIKEVDIY KHDPWDLPRN TVGDNCKEWY FFSMRGRKYR NSVRPNRVTG SGFWKATGID 120 KPVYSTTTTS QSTDRECIGL KKSLVYYRGS AGKGTKTDWM MHEFRLPPNS KTSNQQLLNP 180 KSIIIPEAEV WTLCRIFKRT SNYKRFTPDW KQPIIKQSLG DASSKACSLQ SETGDNHSIN 240 INFKKMEFQQ KNNNTATGGN YQADQRTTDY NNSQPIITMP QSSITSSNSS FWNTSAEEQY 300 FFSDGNWDEL KSVVDLAIDP RSLFGFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-47 | 27 | 205 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760719.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2 | ||||
Swissprot | Q9SK55 | 4e-89 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1U7VEG4 | 0.0 | A0A1U7VEG4_NICSY; transcription factor JUNGBRUNNEN 1-like isoform X2 | ||||
STRING | XP_009760718.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-87 | NAC domain containing protein 42 |