PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03761g00013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 275aa MW: 30170.4 Da PI: 9.0123

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03761g00013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.5e-38	42	102	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rk+++ s Niben101Scf03761g00013.1 42 KDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKKRRCS 102 7899*****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	30	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-32	43	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.723	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDTTQWTQDV GLVTSMAAEL GPANVTCSRP SSTLEKKVRP QKDQAVNCPR CNSTNTKFCY 60 YNNYSLTQPR YFCKTCRRYW TEGGTLRNVP VGGGSRKKRR CSSSLSLSSS SQKLPDSNPN 120 PSLSHQNPNY RINLGNSQDL NLGPSIIHDH NYFHGVPEFL EFPTMDRGNN GNNQPLSSTS 180 STTPISTMDL LRTGIASRGL TSFISTPTPD INTLYRSSFL SGIQENGAKI MFPFGFLNKQ 240 LSGTSAEAAD NYNESKGQEN SSAGYWNGML GGGSW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019234648.1	1e-173	PREDICTED: dof zinc finger protein DOF2.5-like isoform X1
TrEMBL	A0A1J6KYA0	1e-171	A0A1J6KYA0_NICAT; Dof zinc finger protein dof4.6
STRING	XP_009616794.1	1e-170	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	8e-41	Dof family protein