PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 311aa MW: 35241.8 Da PI: 6.8861

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03735g01005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.8	5.1e-20	50	111	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r p+ae+++++++kl +++ ++V++WFqN++a+e++ Niben101Scf03735g01005.1 50 STRWTPTTDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 111 58***************8678***********************************97 PP
2	Wus_type_Homeobox	114.1	7e-37	49	113	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ Niben101Scf03735g01005.1 49 SSTRWTPTTDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 113 789*************9779***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-12	34	113	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-7	35	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.527	46	112	IPR001356	Homeobox domain
SMART	SM00389	4.9E-6	48	116	IPR001356	Homeobox domain
Pfam	PF00046	2.4E-17	51	111	IPR001356	Homeobox domain
CDD	cd00086	4.79E-7	51	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0080166	Biological Process	stomium development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MEAAQQQNQQ HYLHQQHLSI GQVTNNIIED GVGGNSSKNN SSSFMCRQSS TRWTPTTDQI 60 RILKDLYYNN GVRSPTAEQI QRISAKLRQY GKIEGKNVFY WFQNHKARER QKKRLIAAAA 120 TDSNNNIPMQ MRGVWRSVDD PIHHKYNNTT GIHCPSASSH GVLAVGQNGN YGYGTLAMEK 180 SFKDCSISPG GNSNGSMDHQ NITWVGVDPY TSHQSYPFLE KTKHFDETLV DDYEELQQEE 240 ENYQRVSALE TLPLFPMHEE NISSFCNIKH ESSGGFYTEW YRSDDHNLAA AARASLELTL 300 NSFIGRSPNS P

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00265	DAP	Transfer from AT2G17950	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792214.1	0.0	PREDICTED: protein WUSCHEL
Refseq	XP_016474994.1	0.0	PREDICTED: protein WUSCHEL-like
Swissprot	Q8LL11	1e-157	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A1S4AEE8	0.0	A0A1S4AEE8_TOBAC; WUS
TrEMBL	A0A1U7XZ16	0.0	A0A1U7XZ16_NICSY; protein WUSCHEL
STRING	XP_009792214.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7604	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	2e-43	WOX family protein

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]