PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03733g06006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 287aa    MW: 31961.1 Da    PI: 7.4779
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03733g06006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.3e-153274246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                              g +++ E++ +v ++  lG++ W+ Ia+ ++ gRt++++k++w++
  Niben101Scf03733g06006.1 32 GQFSEAEEQTIVTLHSVLGNR-WSVIAAQLP-GRTDNDVKNHWNT 74
                              789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.356125IPR017877Myb-like domain
SuperFamilySSF466899.61E-221083IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-101137IPR009057Homeodomain-like
PROSITE profilePS5129424.6452680IPR017930Myb domain
SMARTSM007173.7E-133078IPR001005SANT/Myb domain
PfamPF002493.2E-133274IPR001005SANT/Myb domain
CDDcd001673.90E-103476No hitNo description
Gene3DG3DSA:1.10.10.603.1E-193877IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRIPCCEKD NRCGKSCRLR WTNYLRPDLK HGQFSEAEEQ TIVTLHSVLG NRWSVIAAQL  60
PGRTDNDVKN HWNTKLKKKL SGMGIDAVTH KPFSHLISEI ANTLSPPQVP HLAEAALGCF  120
KDEMLHLLTK KRIGFQFQFQ QFGMANTATT VSNNVPSTSV KHEDNKHETI AKIKYGLSRA  180
IKEPEMLNPI KNWDTSNFPE NGGFNYNFAS LLNEGEGSPW NQSLCSGSTC TAGGEIQQNK  240
RVISNENCGE NSEGGKEIIT RNGSTTMFNS DCVLWDISSD DLMNPMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-20128040108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252940.10.0PREDICTED: transcription factor MYB80
SwissprotQ7XQN15e-80MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A1J6I2680.0A0A1J6I268_NICAT; Transcription factor myb80
STRINGXP_009767695.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.12e-79myb domain protein 103