PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03695g01008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 202aa    MW: 23404.8 Da    PI: 9.222
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03695g01008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.91.1e-28161363128
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                                GfrFhPtd elv +yL + v + +l++   i e d+y+ ePw   k  + +e+ +yfF++ +kk+ +++r  r++ +g Wk++ 
  Niben101Scf03695g01008.1  16 EGFRFHPTDAELV-KYLLQYVLTGRLPELVPIVEEDLYSKEPWVVFK--DRKERTLYFFTELKKKKIENSRFIRSVGKGSWKSQD 97 
                               7************.89999999999888777*************962..3467899***************************** PP

                       NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k k+v+s+kg+++g k++L +   ++ +++  +W+m+ey+l
  Niben101Scf03695g01008.1  98 KGKPVCSEKGSVMGYKRSLRYQ--NSGSSQDGQWLMKEYSL 136
                               *********************8..44555689*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.87614154IPR003441NAC domain
PfamPF023658.3E-1816136IPR003441NAC domain
SuperFamilySSF1019417.98E-3016154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MHNIKNEEEL CNANTEGFRF HPTDAELVKY LLQYVLTGRL PELVPIVEED LYSKEPWVVF  60
KDRKERTLYF FTELKKKKIE NSRFIRSVGK GSWKSQDKGK PVCSEKGSVM GYKRSLRYQN  120
SGSSQDGQWL MKEYSLADEG YDKDNYVLCR VKRKVAKDDP IARKESIEAA ELDAIINPTD  180
GSTKFPNLAI HDVAKLKIMR MQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-181715418168Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769005.11e-136PREDICTED: NAC domain-containing protein 68-like
RefseqXP_016441925.11e-136PREDICTED: NAC domain-containing protein 68-like
TrEMBLA0A1S3XPQ21e-135A0A1S3XPQ2_TOBAC; NAC domain-containing protein 68-like
TrEMBLA0A1U7W4151e-135A0A1U7W415_NICSY; NAC domain-containing protein 68-like
STRINGXP_009769005.11e-136(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.27e-22NAC domain containing protein 50